zoosporic_holozoa_vs_dikarya — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup. Functional enrichment (novelty)Pfam, InterPro and GO term enrichment of the novelty candidates against the proteome background. Functional enrichment (loss)Pfam, InterPro and GO term enrichment of the loss candidates against the proteome background.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
25
Outgroup proteomes
7
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95
Pipeline version
v0.7.0

Ingroup (25)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
MonobrevMonosiga brevicollisChoanoflagellata
SalproseSalpingoeca rosettaChoanoflagellata
CapsowczCapsaspora owczarzaki ATCC 30864Filasterea_Ichthyosporea
SphaarctSphaeroforma arcticaFilasterea_Ichthyosporea
AmphqueeAmphimedon queenslandicaMetazoa_early
TricadhaTrichoplax adhaerensMetazoa_early
NemavectNematostella vectensisMetazoa_early
MnemleidMnemiopsis leidyiMetazoa_early
CaenelegCaenorhabditis elegansMetazoa_bilateria
DrosmelaDrosophila melanogasterMetazoa_bilateria
HomosapiHomo sapiensMetazoa_bilateria
BatrdendBatrachochytrium dendrobatidis FGSC 10211Zoosporic_Chytridiomycota
BatrsalaBatrachochytrium salamandrivoransZoosporic_Chytridiomycota
SpizpuncSpizellomyces punctatus DAOM BR117Zoosporic_Chytridiomycota
PowehirtPowellomyces hirtusZoosporic_Chytridiomycota
GeravariGeranomyces variabilisZoosporic_Chytridiomycota
SyncendoSynchytrium endobioticumZoosporic_Chytridiomycota
SyncmicrSynchytrium microbalumZoosporic_Chytridiomycota
ChytconfChytriomyces confervaeZoosporic_Chytridiomycota
PolystewPolyrhizophydium stewartiiZoosporic_Chytridiomycota
RhizglobRhizoclosmatium globosumZoosporic_Chytridiomycota
RhizroseRhizophlyctis roseaZoosporic_Chytridiomycota
CateanguCatenaria anguillulae PL171Zoosporic_Blastocladiomycota
AllomacrAllomyces macrogynus ATCC 38327Zoosporic_Blastocladiomycota
PirofinnPiromyces finnisZoosporic_Neocallimastigomycota

Outgroup (7)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
SacccereSaccharomyces cerevisiae S288cDikarya_Ascomycota
SchipombSchizosaccharomyces pombe ATCC 24843Dikarya_Ascomycota
NeurcrasNeurospora crassa FGSC 987Dikarya_Ascomycota
AspeniduAspergillus nidulans M139Dikarya_Ascomycota
MycomaydMycosarcoma maydisDikarya_Basidiomycota
CrypneofCryptococcus neoformans FGSC 9487Dikarya_Basidiomycota
CoprcineCoprinopsis cinerea FGSC 9003Dikarya_Basidiomycota