gallery / domain / zoosporic_holozoa_vs_dikarya / pairwise-diamond / enrichment (novelty)

zoosporic holozoa vs dikarya: functional enrichment (novelty)

One-sided hypergeometric test per term; Benjamini-Hochberg FDR within each scope, level and vocabulary. Candidates are the novelty candidates: gene families present in the IN group and absent from the OUT group. Universe: proteome. Background clustered: True (318843 sequences in 182816 clusters, mmseqs easy-cluster --min-seq-id 0.3 -c 0.8). Family level: one unit per candidate family and per background cluster.

Sources: Pfam: 2026-01-27-Pfam38.2; InterPro entries: 110.0; GO: releases/2026-07-26; analysis generated 2026-10-12T14:56:47. Source tables: studies/eukaryotes/zoosporic_holozoa_vs_dikarya/analysis/enrichment/outputs/proteome_clustered. Full record: PROVENANCE. Run report: report.html.

Caveats

Summary figure

Enrichment summary figure for zoosporic_holozoa_vs_dikarya (novelty)

Annotation coverage

Fraction of proteins with at least one term per vocabulary. Universe = all proteins of the species; candidates = the candidate set.

SpeciesSetProteinsPfamPfam clanInterProGOAny
Monobrevuniverse915673.2%63.4%82.1%68.4%83.1%
Monobrevcandidates19693.4%65.8%99.5%89.3%99.5%
Salproseuniverse1161470.3%59.8%79.8%63.8%80.6%
Salprosecandidates23792.0%64.6%98.3%88.6%98.7%
Capsowczuniverse873879.0%66.2%83.8%71.4%84.1%
Capsowczcandidates12596.0%74.4%100.0%92.0%100.0%
Sphaarctuniverse1820744.2%36.5%53.6%40.7%54.0%
Sphaarctcandidates12786.6%66.1%97.6%83.5%97.6%
Amphqueeuniverse2017473.0%63.1%83.0%64.0%83.3%
Amphqueecandidates38391.4%66.8%99.2%88.0%99.5%
Tricadhauniverse1151884.1%70.4%89.9%77.1%90.4%
Tricadhacandidates30394.1%69.3%99.0%87.1%99.3%
Nemavectuniverse2442873.5%62.6%80.4%63.6%81.0%
Nemavectcandidates41394.7%68.5%99.5%84.3%99.8%
Mnemleiduniverse1928963.5%55.6%72.8%0.0%72.8%
Mnemleidcandidates26996.3%66.2%99.6%0.0%99.6%
Caeneleguniverse1979271.0%57.4%76.1%58.6%77.8%
Caenelegcandidates14898.0%79.0%100.0%96.0%100.0%
Drosmelauniverse1381480.4%63.1%84.4%74.7%87.0%
Drosmelacandidates21097.1%71.0%100.0%90.5%100.0%
Homosapiuniverse2065294.4%75.1%96.4%93.8%97.4%
Homosapicandidates37397.0%70.8%99.5%98.9%100.0%
Batrdenduniverse861068.0%55.5%75.5%64.4%75.9%
Batrdendcandidates25891.9%66.7%98.8%83.0%98.8%
Batrsalauniverse1106060.0%49.6%66.2%53.6%66.6%
Batrsalacandidates28194.0%64.8%99.6%83.3%99.6%
Spizpuncuniverse894077.0%62.6%81.7%68.6%82.1%
Spizpunccandidates30297.0%66.2%99.3%81.8%99.7%
Powehirtuniverse653388.3%72.6%92.2%79.7%92.5%
Powehirtcandidates26594.3%64.5%99.6%81.5%99.6%
Geravariuniverse869672.9%59.8%78.6%65.8%79.0%
Geravaricandidates27293.8%65.1%98.9%80.5%99.3%
Syncendouniverse789564.4%52.3%69.6%59.2%70.0%
Syncendocandidates20593.7%62.0%99.5%82.0%99.5%
Syncmicruniverse630490.2%75.6%94.1%82.1%94.3%
Syncmicrcandidates23794.1%63.7%99.6%81.0%99.6%
Chytconfuniverse1066180.1%68.1%86.9%72.9%87.3%
Chytconfcandidates28793.4%65.2%99.7%81.2%99.7%
Polystewuniverse922972.1%60.4%80.4%63.9%80.9%
Polystewcandidates27095.2%65.2%99.6%84.1%99.6%
Rhizglobuniverse1672556.7%48.2%65.1%50.4%65.5%
Rhizglobcandidates29291.8%66.1%99.0%81.5%99.3%
Rhizroseuniverse1145462.5%51.2%70.1%55.4%70.5%
Rhizrosecandidates29092.8%61.0%97.6%80.7%98.6%
Cateanguuniverse1259048.7%39.4%55.5%44.3%55.8%
Cateangucandidates24091.2%62.5%99.2%85.0%100.0%
Allomacruniverse1861165.4%53.1%72.9%59.8%73.3%
Allomacrcandidates38991.5%64.8%99.5%86.9%99.5%
Pirofinnuniverse1076867.0%56.0%73.5%57.1%73.9%
Pirofinncandidates24393.8%63.0%98.8%81.9%99.2%
ALL_INuniverse32545870.3%58.4%77.0%60.1%77.7%
ALL_INcandidates661593.8%66.3%99.2%81.9%99.5%

Tests summary

Per vocabulary: terms with FDR < 0.05 / terms tested. Protein level counts proteins; family level counts candidate families and background clusters.

ScopeLevelCand. unitsPfam sig / testedPfam clan sig / testedInterPro sig / testedGO sig / tested
whole_setfamily2958297 / 602748 / 600564 / 12289532 / 13705
whole_setprotein6615388 / 769472 / 619709 / 16074691 / 15077
Allomacrfamily2657 / 4408 / 25117 / 109383 / 2399
Allomacrprotein38917 / 78713 / 31140 / 1845132 / 3038
Amphqueefamily3466 / 66111 / 29635 / 1516134 / 2802
Amphqueeprotein38312 / 80413 / 32547 / 1828157 / 2991
Batrdendfamily2541 / 2484 / 2006 / 65067 / 1987
Batrdendprotein2582 / 3078 / 21511 / 78574 / 2076
Batrsalafamily2702 / 2726 / 2108 / 69270 / 1949
Batrsalaprotein2815 / 3307 / 22317 / 81996 / 2038
Caenelegfamily1341 / 5131 / 2763 / 124062 / 3878
Caenelegprotein1485 / 7009 / 29915 / 165191 / 4192
Capsowczfamily1192 / 3642 / 2425 / 89015 / 2062
Capsowczprotein1253 / 4213 / 2537 / 102021 / 2145
Cateangufamily2272 / 2722 / 2025 / 69289 / 1944
Cateanguprotein2404 / 3525 / 21913 / 88094 / 2050
Chytconffamily2562 / 3963 / 2449 / 97484 / 2140
Chytconfprotein2876 / 5907 / 28012 / 138992 / 2408
Drosmelafamily1978 / 5295 / 27816 / 1233115 / 5154
Drosmelaprotein21010 / 7116 / 30821 / 1635131 / 5424
Geravarifamily2703 / 3178 / 2289 / 800105 / 2048
Geravariprotein2723 / 3728 / 24111 / 928106 / 2142
Homosapifamily32112 / 75811 / 33425 / 1702142 / 10060
Homosapiprotein37320 / 132618 / 39455 / 2898261 / 10899
Mnemleidfamily2592 / 5227 / 2668 / 11970 / 0 (skipped_no_annotated_candidates)
Mnemleidprotein2694 / 64311 / 28813 / 14670 / 0 (skipped_no_annotated_candidates)
Monobrevfamily1932 / 3826 / 2214 / 89266 / 2094
Monobrevprotein1963 / 4198 / 2287 / 99267 / 2169
Nemavectfamily3745 / 7456 / 34121 / 1798121 / 3040
Nemavectprotein41314 / 9148 / 37041 / 2214147 / 3294
Pirofinnfamily2331 / 3184 / 2089 / 78862 / 2191
Pirofinnprotein2431 / 4048 / 2249 / 100286 / 2360
Polystewfamily2603 / 3236 / 2178 / 81075 / 1986
Polystewprotein2706 / 4069 / 23516 / 98295 / 2095
Powehirtfamily2623 / 3088 / 2196 / 76188 / 1993
Powehirtprotein2653 / 3589 / 2346 / 88087 / 2078
Rhizglobfamily2731 / 4446 / 24415 / 106182 / 2437
Rhizglobprotein2923 / 5968 / 26814 / 136994 / 2624
Rhizrosefamily2896 / 3697 / 2326 / 915107 / 2125
Rhizroseprotein2906 / 4087 / 2449 / 1016116 / 2194
Salprosefamily2253 / 4767 / 2525 / 109483 / 2211
Salproseprotein2375 / 5235 / 25910 / 121884 / 2289
Sphaarctfamily1251 / 3912 / 2374 / 101432 / 2246
Sphaarctprotein1271 / 4402 / 2464 / 111432 / 2303
Spizpuncfamily3014 / 3658 / 23212 / 88986 / 2446
Spizpuncprotein3024 / 4248 / 24512 / 102188 / 2536
Syncendofamily2031 / 2595 / 1980 / 64962 / 1870
Syncendoprotein2052 / 2967 / 2143 / 73563 / 1923
Syncmicrfamily2361 / 2987 / 2123 / 75068 / 1942
Syncmicrprotein2371 / 3648 / 2246 / 89078 / 2049
Tricadhafamily2635 / 4426 / 2738 / 1067106 / 2509
Tricadhaprotein30310 / 5747 / 28919 / 1393123 / 2728

Top 25 Pfam terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 25 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
PF00211Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain94 / 2711171 / 10778621.8566.67e-99
PF17958EF-hand_13: EF-hand domain23 / 271124 / 10778638.1021.05e-32
PF18027Pepdidase_M14_N: Cytosolic carboxypeptidase N-terminal domain25 / 271132 / 10778631.0625.29e-31
PF03133TTL: Tubulin-tyrosine ligase family37 / 2711108 / 10778613.6211.56e-28
PF07701HNOBA: Heme NO binding associated20 / 271127 / 10778629.4518.67e-24
PF03493BK_channel_a: Calcium-activated BK potassium channel alpha subunit20 / 271128 / 10778628.3992.47e-23
PF00246Peptidase_M14: Zinc carboxypeptidase30 / 271186 / 10778613.8692.51e-23
PF06294CH_2: CH-like domain in sperm protein21 / 271136 / 10778623.1936.99e-22
PF00027cNMP_binding: Cyclic nucleotide-binding domain48 / 2711303 / 1077866.2982.94e-21
PF22614Slo-like_RCK: Calcium-activated potassium channel slowpoke-like RCK domain20 / 271134 / 10778623.3885.74e-21
PF20811PARG_cat_N: Poly (ADP-ribose) glycohydrolase (PARG), helical domain15 / 271116 / 10778637.2748.41e-21
PF07700HNOB: Haem-NO-binding14 / 271114 / 10778639.7591.97e-20
PF05028PARG_cat_C: Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold17 / 271125 / 10778627.0362.54e-19
PF000037tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR51 / 2711385 / 1077865.2672.95e-19
PF30846CEP164_N: CEP164 N-terminal domain15 / 271118 / 10778633.1323.00e-19
PF28678CXorf58_MFI: CXorf58/MFI domain16 / 271123 / 10778627.6581.92e-18
PF25462Beta-barrel_INTS6: INTS6 beta-barrel domain13 / 271114 / 10778636.9197.60e-18
PF26187Ig_NPHP4_4th: NPH4 Ig-like domain 413 / 271115 / 10778634.4585.26e-17
PF02996Prefoldin: Prefoldin subunit18 / 271138 / 10778618.8331.01e-16
PF13870CCDC113_CCDC96_CC: CCDC113/CCDC96, coiled-coil14 / 271119 / 10778629.2961.16e-16
PF21773ODAD1_CC: ODAD1 central coiled coil region14 / 271119 / 10778629.2961.16e-16
PF23277Ig_Dlec1_1: Deleted in lung and esophageal cancer protein 1 Ig domain12 / 271113 / 10778636.72.18e-16
PF01167Tub: Tub family14 / 271120 / 10778627.8313.29e-16
PF08683CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated14 / 271120 / 10778627.8313.29e-16
PF03607DCX: Doublecortin19 / 271147 / 10778616.0733.29e-16

Top 25 InterPro terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 25 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
IPR001054Domain:Adenylyl cyclase class-3/4/guanylyl cyclase99 / 2923190 / 12386722.081.88e-103
IPR029787Homologous_superfamily:Nucleotide cyclase99 / 2923214 / 12386719.6045.59e-97
IPR018297Conserved_site:Adenylyl cyclase class-4/guanylyl cyclase, conserved site36 / 292353 / 12386728.7841.92e-42
IPR050821Family:Cytosolic carboxypeptidase30 / 292340 / 12386731.7832.75e-37
IPR041534Domain:PP2A regulatory subunit B'', EF-hand domain23 / 292324 / 12386740.6112.00e-33
IPR040626Domain:Cytosolic carboxypeptidase, N-terminal25 / 292332 / 12386733.1071.12e-31
IPR011989Homologous_superfamily:Armadillo-like helical142 / 29231839 / 1238673.2724.97e-31
IPR004344Family:Tubulin-tyrosine ligase/Tubulin polyglutamylase37 / 2923108 / 12386714.5181.71e-29
IPR026983Family:Dynein heavy chain41 / 2923172 / 12386710.1017.47e-26
IPR000834Domain:Peptidase M14, carboxypeptidase A31 / 292387 / 12386715.13.82e-25
IPR011645Domain:Haem NO binding associated20 / 292327 / 12386731.392.28e-24
IPR003929Domain:Calcium-activated potassium channel BK, alpha subunit20 / 292328 / 12386730.2697.15e-24
IPR011992Homologous_superfamily:EF-hand domain pair95 / 29231108 / 1238673.6331.18e-23
IPR036322Homologous_superfamily:WD40-repeat-containing domain superfamily144 / 29232277 / 1238672.686.02e-23
IPR015943Homologous_superfamily:WD40/YVTN repeat-like-containing domain superfamily155 / 29232583 / 1238672.5431.55e-22
IPR010441Domain:CH-like domain in sperm protein21 / 292336 / 12386724.721.92e-22
IPR042463Homologous_superfamily:Haem NO binding associated domain superfamily15 / 292315 / 12386742.3772.73e-22
IPR018490Homologous_superfamily:Cyclic nucleotide-binding domain superfamily53 / 2923382 / 1238675.8794.81e-22
IPR016024Homologous_superfamily:Armadillo-type fold156 / 29232649 / 1238672.4965.67e-22
IPR039720Family:Transmembrane protein 9417 / 292321 / 12386734.3057.01e-22
IPR001680Repeat:WD40 repeat129 / 29231975 / 1238672.7688.97e-22
IPR003148Domain:Regulator of K+ conductance, N-terminal lobe20 / 292334 / 12386724.9271.53e-21
IPR000595Domain:Cyclic nucleotide-binding domain51 / 2923363 / 1238675.9541.60e-21
IPR007724Family:Poly(ADP-ribose) glycohydrolase17 / 292322 / 12386732.7462.51e-21
IPR048362Domain:Poly (ADP-ribose) glycohydrolase, helical domain15 / 292316 / 12386739.7282.91e-21

Top 15 GO terms (whole set, family level) — secondary, computational evidence (IEA/IBA) included

15 rows shown, ordered by FDR then p-value; 15 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)GO evidenceFamilies with non-IEA
GO:0005929cellular_component:cilium287 / 23731192 / 910799.2417.63e-184has_non_IEA125
GO:0007017biological_process:microtubule-based process386 / 23732863 / 910795.1751.83e-156has_non_IEA183
GO:0007018biological_process:microtubule-based movement271 / 23731408 / 910797.3878.10e-147has_non_IEA127
GO:0005930cellular_component:axoneme158 / 2373443 / 9107913.6897.56e-129has_non_IEA74
GO:0044782biological_process:cilium organization210 / 2373916 / 910798.7991.07e-128has_non_IEA115
GO:0120025cellular_component:plasma membrane bounded cell projection339 / 23732765 / 910794.7064.23e-124has_non_IEA157
GO:0042995cellular_component:cell projection339 / 23732772 / 910794.6947.69e-124has_non_IEA157
GO:0060271biological_process:cilium assembly191 / 2373805 / 910799.1078.82e-120has_non_IEA105
GO:0120031biological_process:plasma membrane bounded cell projection assembly199 / 2373895 / 910798.5343.00e-119has_non_IEA112
GO:0030031biological_process:cell projection assembly200 / 2373909 / 910798.4455.52e-119has_non_IEA113
GO:0036064cellular_component:ciliary basal body151 / 2373610 / 910799.5015.57e-97has_non_IEA72
GO:0120036biological_process:plasma membrane bounded cell projection organization228 / 23731672 / 910795.2345.68e-91has_non_IEA130
GO:0005815cellular_component:microtubule organizing center223 / 23731724 / 910794.9652.32e-84has_non_IEA113
GO:0042073biological_process:intraciliary transport93 / 2373226 / 9107915.7944.60e-82has_non_IEA38
GO:0030030biological_process:cell projection organization230 / 23731909 / 910794.6245.23e-81has_non_IEA132

Actin cytoskeleton controls

Known actin-related families and how many of their proteins pass each filter. Protein ID columns are left out.

controlpfam_idsdesc_regexIN_universeIN_in_matrixIN_pass_ingroup_rulecandidatesnear_miss_out1near_miss_out2n_Monobrevn_Salprosen_Capsowczn_Sphaarctn_Amphqueen_Tricadhan_Nemavectn_Mnemleidn_Caenelegn_Drosmelan_Homosapin_Batrdendn_Batrsalan_Spizpuncn_Powehirtn_Geravarin_Syncendon_Syncmicrn_Chytconfn_Polystewn_Rhizglobn_Rhizrosen_Cateangun_Allomacrn_Pirofinnn_Saccceren_Schipombn_Neurcrasn_Aspenidun_Mycomaydn_Crypneofn_Coprcine
Arp2/3 ARPC2 (P34-Arc)PF0404526262600011111111111111111111111211111111
Arp2/3 ARPC3 (P21-Arc)PF0406227272700011111111121111111111111211111111
Arp2/3 ARPC4PF0585625252500011111111111111111111111111111111
Arp2/3 ARPC5 (P16-Arc)PF0469928282400101111111212111111121111211111111
Arp2/3 ARPC1 (description only)arp2/3 complex.*(41|p41|subunit 1)|ARPC133300000010000000010001000000000000100
Arp2 / Arp3 (description only)actin-related protein (2|3)\b|\bARP[23]\b1691691620015655667688116767676685671367767755
WAVE complex NCKAP1PF09735252524220011101211112111111101011210000000
WAVE complex CYFIP (FragX_IP)PF05994313027260012105111112111111101011410000000
WAVE complex ABIPF07815|PF275941312700001101131113000000000000000000000
SCAR/WAVE (SCAR_helical)PF27569272715150012102113113111111101011010000000
WASP family (WH1)PF00568636119002233355532411111111111111411111112
WH2 motif (WASP, WAVE, others)PF02205705815501365243344415311111111011222213222
Formin FH2PF02181162158130791488681241187615464443456553972311212
Formin Drf_GBD / Drf_FH3 / Drf_DADPF06371|PF06367|PF063451151148855655357493359344342334373771422223
Ena/VASP (VASP_tetra)PF0877655000010000000013000000000000000000000
Coronin (description only)coronin63636120011222242227113341242241441111111
Cortactin (HS1_rep)PF0221811111010011101111012000000000001000000000
Myosin 2 tail (Myosin_tail_1)PF01576636152000113130268419111111111120120000001
Myosin head (all myosins)PF00063377377371000323223151912201017143978997691371412821145545445

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