gallery / domain / zoosporic_holozoa_vs_dikarya / pairwise-diamond / enrichment (loss)

zoosporic holozoa vs dikarya: functional enrichment (loss)

One-sided hypergeometric test per term; Benjamini-Hochberg FDR within each scope, level and vocabulary. Candidates are the loss candidates: gene families present in the OUT group and absent from the IN group. Universe: proteome. Background clustered: True (58270 sequences in 35928 clusters, mmseqs easy-cluster --min-seq-id 0.3 -c 0.8). Family level: one unit per candidate family and per background cluster.

Sources: Pfam: 2026-01-27-Pfam38.2; InterPro entries: 110.0; GO: releases/2026-07-26; analysis generated 2026-10-12T17:25:20. Source tables: studies/eukaryotes/zoosporic_holozoa_vs_dikarya/analysis/enrichment/outputs/loss/proteome_clustered. Full record: PROVENANCE. Run report: report.html.

Caveats

Summary figure

Enrichment summary figure for zoosporic_holozoa_vs_dikarya (loss)

Annotation coverage

Fraction of proteins with at least one term per vocabulary. Universe = all proteins of the species; candidates = the candidate set.

SpeciesSetProteinsPfamPfam clanInterProGOAny
Sacccereuniverse606688.6%66.3%90.9%94.8%96.4%
Sacccerecandidates4591.1%57.8%97.8%100.0%100.0%
Schipombuniverse512989.7%69.8%91.7%97.7%98.1%
Schipombcandidates3594.3%60.0%100.0%100.0%100.0%
Neurcrasuniverse975969.3%54.9%73.9%62.6%74.6%
Neurcrascandidates5184.3%51.0%98.0%86.3%100.0%
Aspeniduuniverse1056178.2%64.8%83.1%71.4%83.7%
Aspeniducandidates5689.3%67.9%100.0%89.3%100.0%
Mycomayduniverse678877.0%62.2%82.2%73.8%82.7%
Mycomaydcandidates4593.3%48.9%97.8%88.9%100.0%
Crypneofuniverse696575.8%61.7%81.0%71.3%81.3%
Crypneofcandidates4295.2%71.4%100.0%88.1%100.0%
Coprcineuniverse1333458.5%47.3%64.8%47.5%64.9%
Coprcinecandidates5893.1%65.5%100.0%86.2%100.0%
ALL_OUTuniverse5860273.9%59.1%78.6%69.5%80.1%
ALL_OUTcandidates33291.3%60.5%99.1%90.7%100.0%

Tests summary

Per vocabulary: terms with FDR < 0.05 / terms tested. Protein level counts proteins; family level counts candidate families and background clusters.

ScopeLevelCand. unitsPfam sig / testedPfam clan sig / testedInterPro sig / testedGO sig / tested
whole_setfamily24826 / 196312 / 40649 / 3927111 / 5440
whole_setprotein33239 / 410014 / 49767 / 8815151 / 7185
Aspenidufamily562 / 3502 / 2403 / 8408 / 2713
Aspeniduprotein562 / 4642 / 2563 / 109014 / 2883
Coprcinefamily481 / 3105 / 2262 / 76320 / 2290
Coprcineprotein582 / 4385 / 2424 / 104129 / 2420
Crypneoffamily371 / 2213 / 1912 / 58717 / 1886
Crypneofprotein423 / 2714 / 2056 / 71436 / 1989
Mycomaydfamily400 / 2310 / 2010 / 6198 / 2249
Mycomaydprotein451 / 2681 / 2093 / 70324 / 2328
Neurcrasfamily501 / 2992 / 2402 / 7547 / 2539
Neurcrasprotein513 / 3672 / 2465 / 9089 / 2632
Sacccerefamily420 / 1711 / 1750 / 4890 / 3447
Sacccereprotein451 / 2694 / 2003 / 7110 / 3712
Schipombfamily310 / 1570 / 1690 / 4570 / 3006
Schipombprotein351 / 2200 / 1802 / 5986 / 3161

Top 25 Pfam terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 25 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
PF00172Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain35 / 225572 / 223886.0881.77e-14
PF05345He_PIG: Putative Ig domain6 / 2256 / 2238899.5024.73e-10
PF15404PH_4: Pleckstrin homology domain6 / 2256 / 2238899.5024.73e-10
PF23207PH_SPO71: Prospore membrane adapter protein SPO71 PH domain6 / 2256 / 2238899.5024.73e-10
PF02076STE3: Pheromone A receptor7 / 22512 / 2238858.0432.81e-09
PF06011TRP: Transient receptor potential (TRP) ion channel7 / 22515 / 2238846.4341.85e-08
PF09346SMI1_KNR4: SMI1 / KNR4 family (SUKH-1)5 / 2255 / 2238899.5022.75e-08
PF02752Arrestin_C: Arrestin (or S-antigen), C-terminal domain8 / 22528 / 2238828.4295.89e-08
PF14558TRP_N: ML-like domain6 / 22511 / 2238854.2749.31e-08
PF03935SKN1_KRE6_Sbg1: Beta-glucan synthesis-associated protein SKN1/KRE6/Sbg15 / 2256 / 2238882.9199.55e-08
PF08656DASH_Dad3: DASH complex subunit Dad35 / 2256 / 2238882.9199.55e-08
PF25459AIM3_BBC1_C: AIM3/BBC1 Cysteine proteinase-fold domain5 / 2256 / 2238882.9199.55e-08
PF00339Arrestin_N: Arrestin (or S-antigen), N-terminal domain7 / 22522 / 2238831.662.14e-07
PF04082Fungal_trans: Fungal specific transcription factor domain20 / 225380 / 223885.2372.65e-07
PF19117Mim2: Mitochondrial import 25 / 2257 / 2238871.0732.65e-07
PF11951Fungal_trans_2: Fungal specific transcription factor domain11 / 225101 / 2238810.8377.30e-07
PF03595SLAC1: Voltage-dependent anion channel5 / 22513 / 2238838.271.36e-05
PF08552Kei1: Inositolphosphorylceramide synthase subunit Kei14 / 2256 / 2238866.3351.60e-05
PF08229SHR3_chaperone: ER membrane protein SH34 / 2257 / 2238856.8583.51e-05
PF08316Pal1: Pal1 cell morphology protein4 / 22510 / 2238839.8011.95e-04
PF06371Drf_GBD: Diaphanous GTPase-binding Domain4 / 22513 / 2238830.6166.18e-04
PF08219TOM13: Outer membrane protein TOM133 / 2256 / 2238849.7510.002
PF08653DASH_Dam1: DASH complex subunit Dam13 / 2256 / 2238849.7510.002
PF08655DASH_Ask1: DASH complex subunit Ask13 / 2256 / 2238849.7510.002
PF08649DASH_Dad1: DASH complex subunit Dad13 / 2257 / 2238842.6440.003

Top 25 InterPro terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 25 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
IPR036864Homologous_superfamily:Zn(2)-C6 fungal-type DNA-binding domain superfamily37 / 245661 / 245715.6145.76e-14
IPR001138Domain:Zn(2)Cys(6) fungal-type DNA-binding domain37 / 245673 / 245715.5145.76e-14
IPR006644Domain:Dystroglycan-type cadherin-like6 / 2456 / 24571100.296.05e-10
IPR039486Domain:Mug56/Spo71, PH domain6 / 2456 / 24571100.296.05e-10
IPR040345Family:Mug56/Spo716 / 2456 / 24571100.296.05e-10
IPR057379Domain:Prospore membrane adapter protein SPO71, PH domain6 / 2456 / 24571100.296.05e-10
IPR050357Family:Arrestin domain-containing protein9 / 24528 / 2457132.2362.76e-09
IPR001499Family:GPCR fungal pheromone mating factor, STE37 / 24512 / 2457158.5023.35e-09
IPR011022Domain:Arrestin-like, C-terminal domain9 / 24531 / 2457129.1165.76e-09
IPR032800Domain:ML-like domain7 / 24513 / 2457154.0025.76e-09
IPR015919Homologous_superfamily:Cadherin-like superfamily6 / 2458 / 2457175.2179.09e-09
IPR010308Domain:TRP, C-terminal7 / 24515 / 2457146.8021.77e-08
IPR018958Domain:Knr4/Smi1-like domain5 / 2455 / 24571100.292.34e-08
IPR037883Homologous_superfamily:Knr4/Smi1-like domain superfamily5 / 2455 / 24571100.292.34e-08
IPR051873Family:Cell wall assembly regulator KNR4/SMI15 / 2455 / 24571100.292.34e-08
IPR040241Family:Transient receptor potential channel Flc/Pkd2-like7 / 24516 / 2457143.8772.34e-08
IPR007219Domain:Xylanolytic transcriptional activator-like, regulatory domain21 / 245391 / 245715.3861.09e-07
IPR005629Family:Beta-glucan synthesis-associated protein Skn1/Kre6/Sbg15 / 2456 / 2457183.5751.11e-07
IPR013965Family:DASH complex subunit Dad35 / 2456 / 2457183.5751.11e-07
IPR057402Domain:BBC1/AIM3, cysteine proteinase-fold domain5 / 2456 / 2457183.5751.11e-07
IPR011021Domain:Arrestin-like, N-terminal7 / 24522 / 2457131.912.53e-07
IPR037652Family:Mim25 / 2457 / 2457171.6363.49e-07
IPR021858Family:Fungal transcription factor11 / 245101 / 2457110.9239.54e-07
IPR014752Homologous_superfamily:Arrestin-like, C-terminal domain superfamily9 / 24560 / 2457115.0431.31e-06
IPR004695Family:Transporter protein SLAC1/Mae1/ Ssu1/TehA5 / 24513 / 2457138.5731.72e-05

Top 15 GO terms (whole set, family level) — secondary, computational evidence (IEA/IBA) included

15 rows shown, ordered by FDR then p-value; 15 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)GO evidenceFamilies with non-IEA
GO:0042729cellular_component:DASH complex17 / 23157 / 2103827.1621.39e-16has_non_IEA14
GO:1902657biological_process:protein localization to prospore membrane6 / 2316 / 2103891.0744.47e-09has_non_IEA4
GO:0051274biological_process:beta-glucan biosynthetic process10 / 23142 / 2103821.6843.28e-08has_non_IEA6
GO:0008270molecular_function:zinc ion binding44 / 2311310 / 210383.0593.28e-08IEA_only0
GO:0070086biological_process:ubiquitin-dependent endocytosis9 / 23133 / 2103824.8386.62e-08has_non_IEA5
GO:0000981molecular_function:DNA-binding transcription factor activity, RNA polymerase II-specific40 / 2311169 / 210383.1161.12e-07has_non_IEA14
GO:0004932molecular_function:mating-type factor pheromone receptor activity7 / 23116 / 2103839.8451.12e-07has_non_IEA4
GO:0008528molecular_function:G protein-coupled peptide receptor activity7 / 23116 / 2103839.8451.12e-07has_non_IEA4
GO:0016503molecular_function:pheromone receptor activity7 / 23116 / 2103839.8451.12e-07has_non_IEA4
GO:0036318molecular_function:peptide pheromone receptor activity6 / 23110 / 2103854.6441.81e-07has_non_IEA2
GO:0016020cellular_component:membrane103 / 2315425 / 210381.7291.98e-07has_non_IEA57
GO:0001653molecular_function:peptide receptor activity7 / 23118 / 2103835.4182.29e-07has_non_IEA4
GO:0009250biological_process:glucan biosynthetic process10 / 23158 / 2103815.7022.89e-07has_non_IEA6
GO:0051273biological_process:beta-glucan metabolic process10 / 23166 / 2103813.7991.00e-06has_non_IEA6
GO:0046872molecular_function:metal ion binding54 / 2312123 / 210382.3171.06e-06has_non_IEA1

Actin cytoskeleton controls

Known actin-related families and how many of their proteins pass each filter. Protein ID columns are left out.

controlpfam_idsdesc_regexOUT_universeOUT_in_matrixOUT_pass_outgroup_rulecandidatesnear_miss_in1near_miss_in2n_Saccceren_Schipombn_Neurcrasn_Aspenidun_Mycomaydn_Crypneofn_Coprcinen_Monobrevn_Salprosen_Capsowczn_Sphaarctn_Amphqueen_Tricadhan_Nemavectn_Mnemleidn_Caenelegn_Drosmelan_Homosapin_Batrdendn_Batrsalan_Spizpuncn_Powehirtn_Geravarin_Syncendon_Syncmicrn_Chytconfn_Polystewn_Rhizglobn_Rhizrosen_Cateangun_Allomacrn_Pirofinn
Arp2/3 ARPC2 (P34-Arc)PF0404577700011111111111111111111111111111121
Arp2/3 ARPC3 (P21-Arc)PF0406277700011111111111111112111111111111121
Arp2/3 ARPC4PF0585677700011111111111111111111111111111111
Arp2/3 ARPC5 (P16-Arc)PF0469977700011111110111111121211111112111121
Arp2/3 ARPC1 (description only)arp2/3 complex.*(41|p41|subunit 1)|ARPC111100000001000001000000001000100000000
Arp2 / Arp3 (description only)actin-related protein (2|3)\b|\bARP[23]\b4444440007767755565566768811676767668567136
WAVE complex NCKAP1PF0973500000000000001110121111211111110101121
WAVE complex CYFIP (FragX_IP)PF0599400000000000001210511111211111110101141
WAVE complex ABIPF07815|PF2759400000000000000110113111300000000000000
SCAR/WAVE (SCAR_helical)PF2756900000000000001210211311311111110101101
WASP family (WH1)PF00568877000111111223335553241111111111111141
WH2 motif (WASP, WAVE, others)PF0220514149000221322236524334441531111111101122
Formin FH2PF021811212900023112128868124118761546444345655397
Formin Drf_GBD / Drf_FH3 / Drf_DADPF06371|PF06367|PF0634516161341014222235535749335934434233437377
Ena/VASP (VASP_tetra)PF0877600000000000001000000001300000000000000
Coronin (description only)coronin77700011111111122224222711334124224144
Cortactin (HS1_rep)PF0221800000000000001110111101200000000000100
Myosin 2 tail (Myosin_tail_1)PF01576111000000000111313026841911111111112012
Myosin head (all myosins)PF00063323232000554544532322315191220101714397899769137141282114

Page written by bin/generate_enrichment_page.py.