metschnikowiaceae_cah — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup. Functional enrichment (novelty)Pfam, InterPro and GO term enrichment of the novelty candidates against the proteome background. Functional enrichment (loss)Pfam, InterPro and GO term enrichment of the loss candidates against the proteome background.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
9
Outgroup proteomes
13
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95
Pipeline version
v0.7.0+gd03f5a2 (dev)

Ingroup (9)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
CandauriCandidozyma aurisCandidozyma
CandhaemCandidozyma haemuliCandidozyma
CandpseuCandidozyma pseudohaemuliCandidozyma
CandduobCandidozyma duobushaemuliCandidozyma
ClavlusiClavispora lusitaniae ATCC 42720Metschnikowiaceae_other
SunginteSungouiella intermediaMetschnikowiaceae_other
MetsbicuMetschnikowia bicuspidataMetschnikowiaceae_other
MetsaffMetschnikowia aff.Metschnikowiaceae_other
AustsaopAustralozyma saopauloensisMetschnikowiaceae_other

Outgroup (13)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
CandalbiCandida albicans ATCC MYA-2876Serinales_other
CandtropCandida tropicalis T1Serinales_other
LoddelonLodderomyces elongisporus NRRL YB-4239Serinales_other
MeyeguilMeyerozyma guilliermondii NRRL Y-324Serinales_other
DebahansDebaryomyces hansenii IGC 2968Serinales_other
SchestipScheffersomyces stipitis NRRL Y-11545Serinales_other
SpatpassSpathaspora passalidarum 11-Y1Serinales_other
DiutrugoDiutina rugosaSerinales_other
KomaphafKomagataella phaffii ATCC 20864Pichiales
OgatparaOgataea parapolymorpha DL-1Pichiales
KuracapsKuraishia capsulataPichiales
PichkudrPichia kudriavzeviiPichiales
PachtannPachysolen tannophilusAlaninales