gallery / domain / metschnikowiaceae_cah / pairwise-diamond / enrichment (novelty)

metschnikowiaceae cah: functional enrichment (novelty)

One-sided hypergeometric test per term; Benjamini-Hochberg FDR within each scope, level and vocabulary. Candidates are the novelty candidates: gene families present in the IN group and absent from the OUT group. Universe: proteome. Background clustered: True (49255 sequences in 11312 clusters, mmseqs easy-cluster --min-seq-id 0.3 -c 0.8). Family level: one unit per candidate family and per background cluster.

Sources: Pfam: 2026-01-27-Pfam38.2; InterPro entries: 110.0; GO: releases/2026-07-26; analysis generated 2026-10-12T18:41:36. Source tables: studies/fungi/metschnikowiaceae_cah/analysis/enrichment/outputs/proteome_clustered. Full record: PROVENANCE. Run report: report.html.

Caveats

Summary figure

Enrichment summary figure for metschnikowiaceae_cah (novelty)

Annotation coverage

Fraction of proteins with at least one term per vocabulary. Universe = all proteins of the species; candidates = the candidate set.

SpeciesSetProteinsPfamPfam clanInterProGOAny
Candauriuniverse543386.7%68.6%89.7%79.6%90.0%
Candauricandidates180.0%0.0%5.6%0.0%5.6%
Candhaemuniverse524085.7%68.8%89.0%80.3%89.3%
Candhaemcandidates1910.5%5.3%31.6%15.8%31.6%
Candpseuuniverse513285.3%68.6%88.4%80.8%88.8%
Candpseucandidates238.7%0.0%21.7%8.7%21.7%
Candduobuniverse517085.5%68.5%88.9%80.5%89.1%
Candduobcandidates238.7%4.3%8.7%4.3%8.7%
Clavlusiuniverse593279.7%63.0%83.0%74.8%83.3%
Clavlusicandidates210.0%0.0%9.5%0.0%9.5%
Sunginteuniverse592184.5%66.9%88.0%78.6%88.4%
Sungintecandidates160.0%0.0%18.8%0.0%18.8%
Metsbicuuniverse582679.2%61.3%82.6%74.5%82.9%
Metsbicucandidates319.7%3.2%12.9%6.5%12.9%
Metsaffuniverse579581.3%64.1%84.8%75.5%85.1%
Metsaffcandidates3010.0%3.3%26.7%6.7%26.7%
Austsaopuniverse501286.6%68.2%90.3%81.4%90.5%
Austsaopcandidates2524.0%4.0%28.0%4.0%28.0%
ALL_INuniverse4946183.7%66.3%87.0%78.3%87.4%
ALL_INcandidates2068.7%2.4%18.4%5.3%18.4%

Tests summary

Per vocabulary: terms with FDR < 0.05 / terms tested. Protein level counts proteins; family level counts candidate families and background clusters.

ScopeLevelCand. unitsPfam sig / testedPfam clan sig / testedInterPro sig / testedGO sig / tested
whole_setfamily1290 / 5110 / 2541 / 11490 / 3074
whole_setprotein2063 / 38730 / 4606 / 81167 / 5935
Austsaopfamily250 / 1510 / 1780 / 4430 / 1869
Austsaopprotein250 / 1880 / 1920 / 5340 / 1968
Candaurifamily180 / 0 (skipped_no_annotated_candidates)0 / 0 (skipped_no_annotated_candidates)0 / 4590 / 0 (skipped_no_annotated_candidates)
Candauriprotein180 / 0 (skipped_no_annotated_candidates)0 / 0 (skipped_no_annotated_candidates)0 / 5760 / 0 (skipped_no_annotated_candidates)
Candduobfamily230 / 1640 / 1790 / 4670 / 1938
Candduobprotein230 / 2080 / 1920 / 5710 / 2056
Candhaemfamily190 / 1630 / 1830 / 4710 / 1954
Candhaemprotein190 / 2180 / 1950 / 5940 / 2077
Candpseufamily230 / 1650 / 0 (skipped_no_annotated_candidates)0 / 4750 / 2306
Candpseuprotein230 / 2090 / 0 (skipped_no_annotated_candidates)0 / 5820 / 2418
Clavlusifamily210 / 0 (skipped_no_annotated_candidates)0 / 0 (skipped_no_annotated_candidates)0 / 4850 / 0 (skipped_no_annotated_candidates)
Clavlusiprotein210 / 0 (skipped_no_annotated_candidates)0 / 0 (skipped_no_annotated_candidates)0 / 5900 / 0 (skipped_no_annotated_candidates)
Metsafffamily300 / 1520 / 1780 / 4590 / 1885
Metsaffprotein300 / 2120 / 1910 / 5920 / 2001
Metsbicufamily310 / 1430 / 1740 / 4240 / 2400
Metsbicuprotein310 / 1950 / 1860 / 5500 / 2507
Sungintefamily160 / 0 (skipped_no_annotated_candidates)0 / 0 (skipped_no_annotated_candidates)1 / 4870 / 0 (skipped_no_annotated_candidates)
Sunginteprotein160 / 0 (skipped_no_annotated_candidates)0 / 0 (skipped_no_annotated_candidates)1 / 6290 / 0 (skipped_no_annotated_candidates)

Top 25 Pfam terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 0 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
PF05436MF_alpha_N: Mating factor alpha precursor N-terminus1 / 125 / 7337122.2831.000
PF08303tRNA_lig_kinase: tRNA ligase kinase domain1 / 125 / 7337122.2831.000
PF06687SUR7: SUR7/PalI family1 / 129 / 733767.9351.000
PF00018SH3_1: SH3 domain1 / 1234 / 733717.9831.000
PF11765Hyphal_reg_CWP: Hyphally regulated cell wall protein N-terminal1 / 1247 / 733713.0091.000
PF00004AAA: ATPase family associated with various cellular activities (AAA)0 / 1236 / 73370.01.000
PF00005ABC_tran: ABC transporter0 / 1245 / 73370.01.000
PF00006ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain0 / 126 / 73370.01.000
PF00009GTP_EFTU: Elongation factor Tu GTP binding domain0 / 1215 / 73370.01.000
PF00010HLH: Helix-loop-helix DNA-binding domain0 / 1219 / 73370.01.000
PF00012HSP70: Hsp70 protein0 / 127 / 73370.01.000
PF00013KH_1: KH domain0 / 1215 / 73370.01.000
PF00022Actin: Actin0 / 128 / 73370.01.000
PF00023Ank: Ankyrin repeat0 / 129 / 73370.01.000
PF00025Arf: ADP-ribosylation factor family0 / 126 / 73370.01.000
PF00026Asp: Eukaryotic aspartyl protease0 / 1227 / 73370.01.000
PF00027cNMP_binding: Cyclic nucleotide-binding domain0 / 125 / 73370.01.000
PF00043GST_C: Glutathione S-transferase, C-terminal domain0 / 125 / 73370.01.000
PF00063Myosin_head: Myosin head (motor domain)0 / 127 / 73370.01.000
PF00067p450: Cytochrome P4500 / 1214 / 73370.01.000
PF00069Pkinase: Protein kinase domain0 / 12130 / 73370.01.000
PF00071Ras: Ras family0 / 1221 / 73370.01.000
PF00072Response_reg: Response regulator receiver domain0 / 1212 / 73370.01.000
PF00076RRM_1: RNA recognition motif0 / 1281 / 73370.01.000
PF00078RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase)0 / 1213 / 73370.01.000

Top 25 InterPro terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 1 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
IPR006594Conserved_site:LIS1 homology motif3 / 2615 / 774359.5620.017
IPR036465Homologous_superfamily:von Willebrand factor A-like domain superfamily2 / 2623 / 774325.8961.000
IPR008675Domain:Mating factor alpha precursor, N-terminal1 / 265 / 774359.5621.000
IPR015966Domain:tRNA ligase, kinase domain, fungi1 / 265 / 774359.5621.000
IPR036885Homologous_superfamily:SWIB/MDM2 domain superfamily1 / 266 / 774349.6351.000
IPR009571Family:Membrane protein SUR7/Rim9-like, fungi1 / 269 / 774333.091.000
IPR001878Domain:Zinc finger, CCHC-type1 / 2614 / 774321.2721.000
IPR013087Domain:Zinc finger C2H2-type2 / 26112 / 77435.3181.000
IPR036691Homologous_superfamily:Endonuclease/exonuclease/phosphatase superfamily1 / 2627 / 774311.031.000
IPR001810Domain:F-box domain1 / 2639 / 77437.6361.000
IPR001452Domain:SH3 domain1 / 2640 / 77437.4451.000
IPR036028Homologous_superfamily:SH3-like domain superfamily1 / 2640 / 77437.4451.000
IPR021031Domain:Hyphally-regulated cell wall protein, N-terminal1 / 2647 / 77436.3361.000
IPR036236Homologous_superfamily:Zinc finger C2H2 superfamily1 / 2684 / 77433.5451.000
IPR035979Homologous_superfamily:RNA-binding domain superfamily1 / 26112 / 77432.6591.000
IPR012677Homologous_superfamily:Nucleotide-binding alpha-beta plait domain superfamily1 / 26113 / 77432.6351.000
IPR001680Repeat:WD40 repeat1 / 26146 / 77432.041.000
IPR036864Homologous_superfamily:Zn(2)-C6 fungal-type DNA-binding domain superfamily1 / 26155 / 77431.9211.000
IPR001138Domain:Zn(2)Cys(6) fungal-type DNA-binding domain1 / 26161 / 77431.851.000
IPR036322Homologous_superfamily:WD40-repeat-containing domain superfamily1 / 26185 / 77431.611.000
IPR015943Homologous_superfamily:WD40/YVTN repeat-like-containing domain superfamily1 / 26195 / 77431.5271.000
IPR027417Homologous_superfamily:P-loop containing nucleoside triphosphate hydrolase1 / 26441 / 77430.6751.000
IPR000008Domain:C2 domain0 / 2620 / 77430.01.000
IPR000073Domain:Alpha/beta hydrolase fold-10 / 2633 / 77430.01.000
IPR000086Domain:NUDIX hydrolase domain0 / 2615 / 77430.01.000

Top 15 GO terms (whole set, family level) — secondary, computational evidence (IEA/IBA) included

15 rows shown, ordered by FDR then p-value; 0 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)GO evidenceFamilies with non-IEA
GO:0007618biological_process:mating1 / 85 / 6807170.1751.000IEA_only0
GO:0044703biological_process:multi-organism reproductive process1 / 85 / 6807170.1751.000IEA_only0
GO:0003972molecular_function:RNA ligase (ATP) activity1 / 86 / 6807141.8121.000IEA_only0
GO:0008452molecular_function:RNA ligase activity1 / 86 / 6807141.8121.000IEA_only0
GO:0000394biological_process:RNA splicing, via endonucleolytic cleavage and ligation1 / 89 / 680794.5421.000IEA_only0
GO:0006388biological_process:tRNA splicing, via endonucleolytic cleavage and ligation1 / 89 / 680794.5421.000IEA_only0
GO:0016886molecular_function:ligase activity, forming phosphoric ester bonds1 / 89 / 680794.5421.000IEA_only0
GO:0032185biological_process:septin cytoskeleton organization1 / 814 / 680760.7771.000IEA_only0
GO:0045121cellular_component:membrane raft1 / 814 / 680760.7771.000IEA_only0
GO:0098857cellular_component:membrane microdomain1 / 814 / 680760.7771.000IEA_only0
GO:0030865biological_process:cortical cytoskeleton organization1 / 825 / 680734.0351.000IEA_only0
GO:0030866biological_process:cortical actin cytoskeleton organization1 / 825 / 680734.0351.000IEA_only0
GO:0030036biological_process:actin cytoskeleton organization1 / 842 / 680720.2591.000IEA_only0
GO:0030029biological_process:actin filament-based process1 / 849 / 680717.3651.000IEA_only0
GO:0005938cellular_component:cell cortex1 / 853 / 680716.0541.000IEA_only0

Actin cytoskeleton controls

Known actin-related families and how many of their proteins pass each filter. Protein ID columns are left out.

controlpfam_idsdesc_regexIN_universeIN_in_matrixIN_pass_ingroup_rulecandidatesnear_miss_out1near_miss_out2n_Candaurin_Candhaemn_Candpseun_Candduobn_Clavlusin_Sunginten_Metsbicun_Metsaffn_Austsaopn_Candalbin_Candtropn_Loddelonn_Meyeguiln_Debahansn_Schestipn_Spatpassn_Diutrugon_Komaphafn_Ogatparan_Kuracapsn_Pichkudrn_Pachtann
Arp2/3 ARPC2 (P34-Arc)PF040459990001111111111111111111111
Arp2/3 ARPC3 (P21-Arc)PF040628880000111111111111111111111
Arp2/3 ARPC4PF058568880001111111011111111111111
Arp2/3 ARPC5 (P16-Arc)PF046999990001111111111111111111111
Arp2/3 ARPC1 (description only)arp2/3 complex.*(41|p41|subunit 1)|ARPC11110000000000100000000000000
Arp2 / Arp3 (description only)actin-related protein (2|3)\b|\bARP[23]\b5050500006567654567777667787757
WAVE complex NCKAP1PF097350000000000000000000000000000
WAVE complex CYFIP (FragX_IP)PF059940000000000000000000000000000
WAVE complex ABIPF07815|PF275940000000000000000000000000000
SCAR/WAVE (SCAR_helical)PF275690000000000000000000000000000
WASP family (WH1)PF005689990001111111111111111111111
WH2 motif (WASP, WAVE, others)PF022051616160002222131122330221220221
Formin FH2PF021811818180002222222222222222222222
Formin Drf_GBD / Drf_FH3 / Drf_DADPF06371|PF06367|PF063451818180002222222222122222221212
Ena/VASP (VASP_tetra)PF087760000000000000000000000000000
Coronin (description only)coronin7770001111011101000101111111
Cortactin (HS1_rep)PF022180000000000000000000000000000
Myosin 2 tail (Myosin_tail_1)PF015760000000000000000000000000000
Myosin head (all myosins)PF000632626260003333332333333333333343

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