chytrid_vs_mucoromycota — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup. Functional enrichment (novelty)Pfam, InterPro and GO term enrichment of the novelty candidates against the proteome background. Functional enrichment (loss)Pfam, InterPro and GO term enrichment of the loss candidates against the proteome background.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
11
Outgroup proteomes
11
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95
Pipeline version
v0.7.0+gd03f5a2 (dev)

Ingroup (11)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
BatrdendBatrachochytrium dendrobatidis FGSC 10211Chytridiomycota
BatrsalaBatrachochytrium salamandrivoransChytridiomycota
SpizpuncSpizellomyces punctatus DAOM BR117Chytridiomycota
PowehirtPowellomyces hirtusChytridiomycota
GeravariGeranomyces variabilisChytridiomycota
SyncendoSynchytrium endobioticumChytridiomycota
SyncmicrSynchytrium microbalumChytridiomycota
ChytconfChytriomyces confervaeChytridiomycota
PolystewPolyrhizophydium stewartiiChytridiomycota
RhizglobRhizoclosmatium globosumChytridiomycota
RhizroseRhizophlyctis roseaChytridiomycota

Outgroup (11)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
MucocircMucor circinelloides 1006PhLMucoromycotina
RhizdeleRhizopus delemar NRRL 43880Mucoromycotina
LichcoryLichtheimia corymbiferaMucoromycotina
PhycblakPhycomyces blakesleeanus NRRL 1555Mucoromycotina
AbsiglauAbsidia glaucaMucoromycotina
SyncraceSyncephalastrum racemosumMucoromycotina
ChoacucuChoanephora cucurbitarumMucoromycotina
HessvesiHesseltinella vesiculosaMucoromycotina
UmbevinaUmbelopsis vinaceaMortierellomycotina_Umbelopsidomycotina
MortisabMortierella isabellinaMortierellomycotina_Umbelopsidomycotina
ThamsphaThamnocephalis sphaerosporaZoopagomycota