zoosporic_dikarya — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup. Functional enrichment (novelty)Pfam, InterPro and GO term enrichment of the novelty candidates against the proteome background. Functional enrichment (loss)Pfam, InterPro and GO term enrichment of the loss candidates against the proteome background.

Species tree

Species tree

phyling (FastTree, consensus of 10 single-marker trees; top 10 markers by treeness/RCV), fungi_odb12. Rooted on the OUT group (monophyletic).

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
4
Outgroup proteomes
5
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95
Pipeline version
v0.7.0+gd03f5a2 (dev)

Ingroup (4)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
BatrdendBatrachochytrium dendrobatidis JAM81Zoosporic
SpizpuncSpizellomyces punctatus DAOM BR117Zoosporic
SyncendoSynchytrium endobioticumZoosporic
CateanguCatenaria anguillulae PL171Zoosporic

Outgroup (5)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
ScerSaccharomyces cerevisiae S288CDikarya
NcraNeurospora crassa OR74ADikarya
AnidAspergillus nidulans FGSC A4Dikarya
SpomSchizosaccharomyces pombe 972hDikarya
CcinCoprinopsis cinerea Okayama-7/130Dikarya