generated: '2026-10-25T19:41:22Z'
class: derived table (tracked, class 2); inputs are ephemeral and not tracked
source_url: none; derived from this repo's yeast_convergence enrichment output
license: derived; inputs follow their own licenses (UniProt CC BY 4.0, BFD lab annotations unpublished)
derived_by:
  script: studies/fungi/yeast_convergence/bin/convergence_compare.py
  script_sha256: 8275545a2b27badfb654ffd3a8f84c93bc85257f55d4b2cc9cbcb4b15e55fcaa
  script_last_commit: 6112d909a54981739945df0744c0d92709a1e6d8
  repo_head_when_recorded: 6112d909a54981739945df0744c0d92709a1e6d8
  script_checkout: /scratch/jstajich/30414886/wt_b
  command: /usr/bin/python3.12 studies/fungi/yeast_convergence/bin/convergence_compare.py
  parameters:
    alpha: 0.05
    fdr: 0.05
    folder: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/yeast_convergence
    include_mixed_annotation: false
    level: family
    min_in_novelty: 2
    min_k: 3
    min_origins: 3
    out_dir: null
    scope: whole_set
    vocab:
    - pfam
    - pfam_clan
    - interpro
    - go
  run_finished_utc: '2026-10-25T19:41:22Z'
  python_of_run: 3.12.13
  source: analysis/convergence/run_record.json, written by convergence_compare.py during the run
workflow_versions:
  pipeline_main_nf_roots:
  - /rhome/jstajich/projects/NovInvenio-worktrees/main-d03f5a2
  pipeline_checkout_head_now:
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  pipeline_dir_name_matches_head_now:
    /rhome/jstajich/projects/NovInvenio-worktrees/main-d03f5a2: true
  nextflow:
  - 26.04.6
  pipeline_run_mode: pairwise diamond (--run_tool diamond)
  enrichment_script: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/zoosporic_dikarya/analysis/enrichment/enrich_novelties_v2.py
  enrichment_script_sha256: d1e8fe16f6842e86fb6c226f822c8c173450a8fec660ca6879a6f8a821ad5aa7
  pfam_annotation_file: /srv/projects/db/pfam/2026-01-27-Pfam38.2/Pfam-A.hmm.dat
  python_of_this_record: 3.12.13
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  studies/fungi/yeast_convergence/focus_terms.tsv: 55c8837e8a0a8ea89302be7b21024fac5329e3085317ff6c447b5a6b12f6cf72
outputs_sha256:
  annotation_coverage.tsv: cbc09e8dda752bee9e99ffa8a296c1a4a4fb2250c30214e82c7add9797fa5d2b
  focus_terms.tsv: b04319e7c1a05f6eaaece5633ab485c5a6ae25285e85c016ae643d475818c6d8
  pairwise_jaccard.tsv: 36fce3f0ef056165b01dcb40490c4b196aeed8765ee3d799744a7e1d5126c0c0
  reversal_overlap.tsv: 3dd63aefc40ece83a54ced7d646cb3695e454bd445f567e5f0326553fc7d64e5
  run_record.json: 1878ed1dc8e9c9d3c83a846ecea9dba2f6327aef20ce4d1d078950aafac2713b
  summary.md: cdbb7cf8d6bb1e3994cef9cc6a63bc86f0418bcaeec2963ef37fa3906a58d238
  term_recurrence.tsv.gz: 3c2425722701fd1fa88e89d8e036445818b921ea76f4710da0e5269b657173bb
output_note: term_recurrence.tsv.gz is gzip of term_recurrence.tsv (mtime 0); the plain file is ignored by git. Its sha256
  is of the .gz.
scope_note: All contrasts that have enrichment tables (see run_record.json missing_tables). GO/InterPro only over all-UniProt
  contrasts.