gallery / domain / serinales_vs_pichiales / pairwise-diamond / enrichment (novelty)

serinales vs pichiales: functional enrichment (novelty)

One-sided hypergeometric test per term; Benjamini-Hochberg FDR within each scope, level and vocabulary. Candidates are the novelty candidates: gene families present in the IN group and absent from the OUT group. Universe: proteome. Background clustered: True (102522 sequences in 23051 clusters, mmseqs easy-cluster --min-seq-id 0.3 -c 0.8). Family level: one unit per candidate family and per background cluster.

Sources: Pfam: 2026-01-27-Pfam38.2; InterPro entries: 110.0; GO: releases/2026-07-26; analysis generated 2026-10-12T15:21:05. Source tables: studies/fungi/serinales_vs_pichiales/analysis/enrichment/outputs/proteome_clustered. Full record: PROVENANCE. Run report: report.html.

Caveats

Summary figure

Enrichment summary figure for serinales_vs_pichiales (novelty)

Annotation coverage

Fraction of proteins with at least one term per vocabulary. Universe = all proteins of the species; candidates = the candidate set.

SpeciesSetProteinsPfamPfam clanInterProGOAny
Candalbiuniverse604084.2%65.5%88.1%82.9%90.2%
Candalbicandidates20546.8%20.5%54.6%45.4%63.9%
Canddubluniverse582985.5%66.9%89.1%80.5%89.6%
Canddublcandidates19043.2%18.4%48.9%31.6%49.5%
Candtropuniverse622681.9%64.7%85.9%76.9%86.3%
Candtropcandidates18444.6%22.3%51.1%32.1%51.1%
Loddelonuniverse577982.1%64.8%86.1%77.5%86.6%
Loddeloncandidates19038.4%20.5%47.4%25.8%47.9%
Meyeguiluniverse591985.5%68.6%89.1%80.3%89.4%
Meyeguilcandidates16735.3%17.4%41.3%21.6%41.3%
Debahansuniverse628483.2%65.2%86.6%78.1%86.8%
Debahanscandidates17836.5%16.3%44.4%25.8%44.4%
Schestipuniverse579787.4%69.0%90.8%82.2%91.1%
Schestipcandidates18137.6%18.2%43.1%26.0%43.6%
Spatpassuniverse597383.9%66.2%87.4%78.4%87.7%
Spatpasscandidates18440.2%22.3%48.9%29.9%48.9%
Hyphburtuniverse599382.8%65.2%86.2%77.8%86.5%
Hyphburtcandidates18435.9%18.5%40.8%25.0%41.9%
Suhotanzuniverse588181.5%63.8%84.5%76.5%84.7%
Suhotanzcandidates18342.1%22.9%45.4%29.0%45.4%
Candtenuuniverse554085.3%67.7%88.4%80.0%88.7%
Candtenucandidates14331.5%15.4%39.2%20.3%40.6%
Babjinosuniverse639379.0%62.0%82.1%74.0%82.4%
Babjinoscandidates2373.9%60.9%78.3%56.5%78.3%
Diutrugouniverse581181.2%64.5%84.9%75.5%85.2%
Diutrugocandidates16948.5%25.4%52.1%28.4%52.1%
Yamajarouniverse582086.8%68.5%90.2%81.0%90.5%
Yamajarocandidates16541.2%20.6%47.9%26.7%47.9%
Candauriuniverse543386.7%68.6%89.7%79.6%90.0%
Candauricandidates17241.3%20.3%48.8%30.2%50.0%
Clavlusiuniverse593279.7%63.0%83.0%74.8%83.3%
Clavlusicandidates16938.5%18.9%47.3%26.6%47.9%
Metsbicuuniverse582679.2%61.3%82.6%74.5%82.9%
Metsbicucandidates16546.7%19.4%53.3%26.7%53.3%
Lizasparuniverse504186.9%68.5%90.8%81.8%91.1%
Lizasparcandidates14338.5%17.5%45.5%25.2%46.9%
ALL_INuniverse10551783.4%65.7%86.9%78.4%87.3%
ALL_INcandidates299540.8%20.1%47.4%28.5%48.5%

Tests summary

Per vocabulary: terms with FDR < 0.05 / terms tested. Protein level counts proteins; family level counts candidate families and background clusters.

ScopeLevelCand. unitsPfam sig / testedPfam clan sig / testedInterPro sig / testedGO sig / tested
whole_setfamily123431 / 10736 / 32343 / 216111 / 4056
whole_setprotein299586 / 413718 / 469138 / 8628167 / 6947
Babjinosfamily230 / 1680 / 1840 / 4850 / 2453
Babjinosprotein230 / 2460 / 2040 / 6480 / 2598
Candalbifamily1841 / 1730 / 1851 / 5000 / 2842
Candalbiprotein2054 / 2491 / 2045 / 67212 / 2967
Candaurifamily1631 / 1590 / 1801 / 4620 / 2008
Candauriprotein1722 / 2071 / 1943 / 5766 / 2114
Canddublfamily1771 / 1720 / 1811 / 4910 / 1990
Canddublprotein1902 / 2471 / 2003 / 6588 / 2144
Candtenufamily1400 / 1460 / 1720 / 4400 / 1878
Candtenuprotein1431 / 2050 / 1911 / 5910 / 2031
Candtropfamily1781 / 1840 / 1831 / 5110 / 2475
Candtropprotein1842 / 2551 / 1943 / 6661 / 2611
Clavlusifamily1691 / 1700 / 1871 / 4940 / 2430
Clavlusiprotein1691 / 2100 / 1991 / 5900 / 2499
Debahansfamily1741 / 1760 / 1821 / 4960 / 2526
Debahansprotein1781 / 2400 / 2042 / 6460 / 2649
Diutrugofamily1641 / 1590 / 1831 / 4620 / 1891
Diutrugoprotein1692 / 2241 / 2053 / 5953 / 2035
Hyphburtfamily1790 / 1670 / 1820 / 4910 / 2472
Hyphburtprotein1840 / 2181 / 1970 / 6214 / 2574
Lizasparfamily1420 / 1510 / 1720 / 4610 / 1862
Lizasparprotein1430 / 1970 / 1870 / 5560 / 1969
Loddelonfamily1861 / 1700 / 1811 / 4790 / 2387
Loddelonprotein1901 / 2250 / 2001 / 6011 / 2496
Metsbicufamily1650 / 1430 / 1750 / 4300 / 2411
Metsbicuprotein1650 / 1950 / 1860 / 5500 / 2507
Meyeguilfamily1660 / 1740 / 1760 / 5050 / 2478
Meyeguilprotein1670 / 2260 / 1900 / 6280 / 2576
Schestipfamily1760 / 1650 / 1830 / 4820 / 2499
Schestipprotein1811 / 2390 / 2031 / 6473 / 2640
Spatpassfamily1771 / 1751 / 1821 / 5020 / 2479
Spatpassprotein1842 / 2242 / 1962 / 6177 / 2582
Suhotanzfamily1771 / 1630 / 1815 / 4690 / 2441
Suhotanzprotein1831 / 2171 / 1921 / 5794 / 2550
Yamajarofamily1621 / 1670 / 1741 / 4740 / 1918
Yamajaroprotein1651 / 2351 / 1941 / 6351 / 2050

Top 25 Pfam terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 25 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
PF29124MSC3_beta: Meiotic sister-chromatid recombination protein 3 beta-sheet domain10 / 47711 / 1340725.5523.39e-11
PF05730CFEM: CFEM domain13 / 47724 / 1340715.2251.17e-10
PF29143PGA45_C: GPI-anchored protein 45 C-terminal domain9 / 47710 / 1340725.2962.94e-10
PF29045YOL036W_C: YOL036W-like C-terminal domain7 / 4777 / 1340728.1071.85e-08
PF03583LIP: Secretory lipase6 / 4776 / 1340728.1073.52e-07
PF11214Med2: Mediator complex subunit 26 / 4776 / 1340728.1073.52e-07
PF27837Fyv8: Protein Fyv86 / 4778 / 1340721.086.66e-06
PF12632Vezatin: Mysoin-binding motif of peroxisomes5 / 4775 / 1340728.1076.66e-06
PF28466DUF8407: Domain of unknown function (DUF8407)5 / 4775 / 1340728.1076.66e-06
PF12657TFIIIC_delta: Transcription factor IIIC subunit delta bet-propeller domain6 / 4779 / 1340718.7381.24e-05
PF18497RNase_3_N: Ribonuclease III N-terminal domain6 / 4779 / 1340718.7381.24e-05
PF29116PET130: Mitochondrial protein PET1306 / 4779 / 1340718.7381.24e-05
PF29481SKG1: SKG1 domain6 / 4779 / 1340718.7381.24e-05
PF29044FGR15_N: Filamentous growth regulator 15 N-terminal domain7 / 47714 / 1340714.0531.46e-05
PF04478Mid2: Mid2 like cell wall stress sensor5 / 4777 / 1340720.0767.91e-05
PF02257RFX_DNA_binding: RFX DNA-binding domain6 / 47713 / 1340712.9721.83e-04
PF00498FHA: FHA domain9 / 47737 / 134076.8372.73e-04
PF15511CENP-T_C: Centromere kinetochore component CENP-T histone fold5 / 4779 / 1340715.6153.73e-04
PF13094CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit5 / 47710 / 1340714.0536.85e-04
PF03134TB2_DP1_HVA22: TB2/DP1, HVA22 family5 / 47711 / 1340712.7760.001
PF07954DUF1689: Protein of unknown function (DUF1689)5 / 47711 / 1340712.7760.001
PF207894HBT_3C: Acyl-CoA thioesterase C-terminal domain4 / 4776 / 1340718.7380.001
PF29317AIM44: Altered inheritance of mitochondria protein 444 / 4776 / 1340718.7380.001
PF01399PCI: PCI domain7 / 47726 / 134077.5670.001
PF11488Lge1: Transcriptional regulatory protein LGE14 / 4777 / 1340716.0610.002

Top 25 InterPro terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 25 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
IPR062021Domain:Meiotic sister-chromatid recombination protein 3, beta-sheet domain10 / 57111 / 1455023.1651.84e-10
IPR008427Domain:Extracellular membrane protein, CFEM domain13 / 57124 / 1455013.8038.30e-10
IPR063250Domain:GPI-anchored protein 45, C-terminal9 / 57110 / 1455022.9331.44e-09
IPR0517359 / 57111 / 1455020.8495.75e-09
IPR062062Domain:YOL036W-like, C-terminal domain7 / 5717 / 1455025.4825.98e-08
IPR005152Family:Lipase, secreted7 / 5718 / 1455022.2963.85e-07
IPR021017Family:Mediator complex, subunit Med2, fungi6 / 5716 / 1455025.4821.10e-06
IPR026859Domain:Myosin-binding domain5 / 5715 / 1455025.4822.01e-05
IPR059451Domain:Domain of unknown function DUF84075 / 5715 / 1455025.4822.01e-05
IPR026248Family:Protein Fyv86 / 5718 / 1455019.1112.01e-05
IPR000999Domain:Ribonuclease III domain8 / 57118 / 1455011.3253.25e-05
IPR024761Domain:Transcription factor IIIC, 90kDa subunit, N-terminal6 / 5719 / 1455016.9883.89e-05
IPR040540Domain:Ribonuclease III, N-terminal domain6 / 5719 / 1455016.9883.89e-05
IPR062383Family:Mitochondrial protein PET1306 / 5719 / 1455016.9883.89e-05
IPR063222Domain:SKG1-like domain6 / 5719 / 1455016.9883.89e-05
IPR062451Domain:Filamentous growth regulator 15. N-terminal domain7 / 57114 / 1455012.7415.04e-05
IPR036389Homologous_superfamily:Ribonuclease III, endonuclease domain superfamily8 / 57122 / 145509.2661.34e-04
IPR007567Domain:Mid2 domain5 / 5717 / 1455018.2012.16e-04
IPR011032Homologous_superfamily:GroES-like superfamily9 / 57137 / 145506.1980.001
IPR035425Domain:CENP-T/Histone H4, histone fold5 / 5719 / 1455014.1560.001
IPR003703Family:Acyl-CoA thioesterase5 / 57110 / 1455012.7410.002
IPR025212Family:Centromere protein Q5 / 57110 / 1455012.7410.002
IPR003150Domain:DNA-binding RFX-type, winged-helix domain6 / 57116 / 145509.5560.002
IPR008984Homologous_superfamily:SMAD/FHA domain superfamily9 / 57142 / 145505.460.003
IPR049450Domain:Acyl-CoA thioesterase-like, C-terminal domain4 / 5716 / 1455016.9880.003

Top 15 GO terms (whole set, family level) — secondary, computational evidence (IEA/IBA) included

15 rows shown, ordered by FDR then p-value; 11 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)GO evidenceFamilies with non-IEA
GO:0016042biological_process:lipid catabolic process14 / 33282 / 121516.2491.32e-04has_non_IEA4
GO:0004525molecular_function:ribonuclease III activity8 / 33223 / 1215112.731.32e-04has_non_IEA1
GO:0032296molecular_function:double-stranded RNA-specific ribonuclease activity8 / 33223 / 1215112.731.32e-04has_non_IEA1
GO:0017022molecular_function:myosin binding5 / 3329 / 1215120.3330.002IEA_only0
GO:0005782cellular_component:peroxisomal matrix7 / 33225 / 1215110.2480.002has_non_IEA2
GO:0031907cellular_component:microbody lumen7 / 33225 / 1215110.2480.002has_non_IEA2
GO:0008541cellular_component:proteasome regulatory particle, lid subcomplex7 / 33229 / 121518.8340.005IEA_only0
GO:0047617molecular_function:fatty acyl-CoA hydrolase activity5 / 33212 / 1215115.250.005IEA_only0
GO:0016289molecular_function:acyl-CoA hydrolase activity5 / 33213 / 1215114.0770.007IEA_only0
GO:0004806molecular_function:triacylglycerol lipase activity7 / 33232 / 121518.0060.008has_non_IEA1
GO:0005576cellular_component:extracellular region16 / 332189 / 121513.0980.023has_non_IEA7
GO:0008534molecular_function:oxidized purine nucleobase lesion DNA N-glycosylase activity3 / 3325 / 1215121.960.066has_non_IEA1
GO:0000372biological_process:Group I intron splicing4 / 33212 / 1215112.20.066IEA_only0
GO:0000376biological_process:RNA splicing, via transesterification reactions with guanosine as nucleophile4 / 33212 / 1215112.20.066IEA_only0
GO:0016790molecular_function:thiolester hydrolase activity5 / 33222 / 121518.3180.072IEA_only0

Actin cytoskeleton controls

Known actin-related families and how many of their proteins pass each filter. Protein ID columns are left out.

controlpfam_idsdesc_regexIN_universeIN_in_matrixIN_pass_ingroup_rulecandidatesnear_miss_out1near_miss_out2n_Candalbin_Canddubln_Candtropn_Loddelonn_Meyeguiln_Debahansn_Schestipn_Spatpassn_Hyphburtn_Suhotanzn_Candtenun_Babjinosn_Diutrugon_Yamajaron_Candaurin_Clavlusin_Metsbicun_Lizasparn_Komaphafn_Ogatparan_Kuracapsn_Pichmembn_Pichkudrn_Bretnaarn_Eeninanan_Ogatpolyn_Pachtannn_Saccceren_Kluylactn_Lachthern_Candglabn_Torudelbn_Eremgoss
Arp2/3 ARPC2 (P34-Arc)PF04045181818000111111111111111111111111111111111
Arp2/3 ARPC3 (P21-Arc)PF04062171717000111111111111110111111111111111111
Arp2/3 ARPC4PF05856181818000111111111111111111111111111111111
Arp2/3 ARPC5 (P16-Arc)PF04699181818000111111111111111111111111111111111
Arp2/3 ARPC1 (description only)arp2/3 complex.*(41|p41|subunit 1)|ARPC1000000000000000000000000000000000000000
Arp2 / Arp3 (description only)actin-related protein (2|3)\b|\bARP[23]\b113113113000777776675557776647877756777766776
WAVE complex NCKAP1PF09735000000000000000000000000000000000000000
WAVE complex CYFIP (FragX_IP)PF05994000000000000000000000000000000000000000
WAVE complex ABIPF07815|PF27594000000000000000000000000000000000000000
SCAR/WAVE (SCAR_helical)PF27569000000000000000000000000000000000000000
WASP family (WH1)PF00568171717000111111111101111111111111111111111
WH2 motif (WASP, WAVE, others)PF02205303030000233302212201222111202221111222222
Formin FH2PF02181353535000222222222222212222222222222222223
Formin Drf_GBD / Drf_FH3 / Drf_DADPF06371|PF06367|PF06345313131001221222222202202222212212212122122
Ena/VASP (VASP_tetra)PF08776000000000000000000000000000000000000000
Coronin (description only)coronin131313000110001011111111011111111111111111
Cortactin (HS1_rep)PF02218000000000000000000000000000000000000000
Myosin 2 tail (Myosin_tail_1)PF01576000000000000000000000000000000000000000
Myosin head (all myosins)PF00063474747000333333331203333323333243333533533

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