malassezia_vs_ustilaginomycotina — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup. Functional enrichment (novelty)Pfam, InterPro and GO term enrichment of the novelty candidates against the proteome background. Functional enrichment (loss)Pfam, InterPro and GO term enrichment of the loss candidates against the proteome background.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
10
Outgroup proteomes
18
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95
Pipeline version
v0.7.0+gd03f5a2 (dev)

Ingroup (10)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
MalaglobMalassezia globosa CBS 7966Malasseziales
MalasympMalassezia sympodialis ATCC 42132Malasseziales
MalarestMalassezia restricta CBS 7877Malasseziales
MalafurfMalassezia furfurMalasseziales
MalapachMalassezia pachydermatisMalasseziales
MalavespMalassezia vespertilionisMalasseziales
MalananaMalassezia nanaMalasseziales
MalabrasMalassezia brasiliensisMalasseziales
MalajapoMalassezia japonicaMalasseziales
MalaarunMalassezia arunalokeiMalasseziales

Outgroup (18)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
MycomaydMycosarcoma maydisUstilaginales
UstihordUstilago hordeiUstilaginales
SporreilSporisorium reilianum SRZ2Ustilaginales
MoesaphiMoesziomyces aphidisUstilaginales
KalmbrasKalmanozyma brasiliensis GHG001Ustilaginales
PseuflocPseudozyma flocculosaUstilaginales
SporgramSporisorium graminicolaUstilaginales
TestcypeTesticularia cyperiUstilaginales
TillindiTilletia indicaTilletiales
TillcariTilletia cariesTilletiales
MeirmiltMeira miltonrushiiExobasidiomycetes
AcaringoAcaromyces ingoldiiExobasidiomycetes
JamiroseJaminaea roseaExobasidiomycetes
MicrglucMicrostroma glucosiphilumExobasidiomycetes
TillwashTilletiopsis washingtonensisExobasidiomycetes
CerabombCeraceosorus bombacisCeraceosorales_Violaceomycetales
ViolpaluViolaceomyces palustrisCeraceosorales_Violaceomycetales
TillanomTilletiaria anomala UBC 951Tilletiariales