fusarium_FOXY — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
19
Outgroup proteomes
4
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95
Pipeline version
v0.6.1+ga72b4bc (dev)

Ingroup (19)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
Fuox_54006Fusarium odoratissimum 54006no-fsp-in-name
Fuox_Foa_44Fusarium oxysporum Foa 44albedinis
Fuox_FoC_Fus2Fusarium oxysporum FoC_Fus2cepae
Fuox_Fo5176Fusarium oxysporum Fo5176conglutinans
Fuox_TwR11Fusarium oxysporum Tw-R1-1cubense
Fuox_4287Fusarium oxysporum 4287lycopersici
Fuox_Stocks4Fusarium oxysporum Stocks4matthiolae
Fuox_26406Fusarium oxysporum 26406melonis
Fuox_RF12Fusarium oxysporum RF12mori
Fuox_N139Fusarium oxysporum N139narcissi
Fuox_Fo47Fusarium oxysporum Fo47no-fsp-in-name
Fuox_FOPSP1Fusarium oxysporum FOP-SP1phaseoli
Fuox_HDV247Fusarium oxysporum HDV247pisi
Fuox_Forc016Fusarium oxysporum Forc016radicis-cucumerinum
Fuox_26381Fusarium oxysporum 26381radicis-lycopersici
Fuox_F38Fusarium oxysporum F38rapae
Fuox_54005Fusarium oxysporum 54005raphani
Fuox_ME23Fusarium oxysporum ME23vasinfectum
Fuox_pin22Fusarium oxysporum pin22zingiberi

Outgroup (4)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
Fuso_SB1Fusarium solani SB1no-fsp-in-name
Fufu_IMI_58289Fusarium fujikuroi IMI 58289no-fsp-in-name
Fugr_PH1_NRRL_31084Fusarium graminearum PH-1; NRRL 31084no-fsp-in-name
Fuin_CF00095Fusarium equiseti CF00095no-fsp-in-name