derived_by: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/coccidioides_pangenome/analysis/starship_island_overlap/scripts/sm_captain_overlap.py
date: 2026-10-17
command: scripts/sm_captain_overlap.py --antismash-dir inputs/antismash --captain-tblout inputs/DUF3435_vs_antismash_annotation.tblout.zst --config ../../config_immitis_in_posadasii_out.csv --out-dir immitis_in_posadasii_out_v5
source_annotation: /bigdata/stajichlab/shared/projects/Coccidioides/PopGenomics/2025_All_Cocci/Assembly/annotation/<strain>/{antismash_local,annotate_misc,annotate_results} (antiSMASH 8.0.1, funannotate 1.8.17; not the 20260112 freeze used by the pangenome runs)
inputs:
  sm_regions.tsv.gz:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/coccidioides_pangenome/analysis/starship_island_overlap/inputs/antismash/sm_regions.tsv.gz
    sha256: d8d24e911c9d39d9fa78837bb0741f541bd1d256a3ea41b990a47e08d0c061f1
  sm_region_genes.tsv.gz:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/coccidioides_pangenome/analysis/starship_island_overlap/inputs/antismash/sm_region_genes.tsv.gz
    sha256: 8553408c8a913341c9187b3ca0ed0eb6a4839b52a4e136354c99be575035814a
  gene_counts.tsv:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/coccidioides_pangenome/analysis/starship_island_overlap/inputs/antismash/gene_counts.tsv
    sha256: bbbddc1411a2282381d7c084634e322f469dbe98510dbba9e0901f41b9c14e42
  captain_tblout:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/coccidioides_pangenome/analysis/starship_island_overlap/inputs/DUF3435_vs_antismash_annotation.tblout.zst
    sha256: 0be53835d7a6d8b540ccdf9658cf146ab2239de37a3c470b6df5c9a259826d18
  config:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/coccidioides_pangenome/config_immitis_in_posadasii_out.csv
    sha256: 3271745e3783d0d2207d3675b4bba5465e29d8a0513589122ea9c7c9ca587456