agaricomycetes_mmseqs — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
4
Outgroup proteomes
3
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95

Ingroup (4)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
ScomSchizophyllum commune H4-8Agaricales
CcinCoprinopsis cinerea Okayama7#130Agaricales
AgbiAgaricus bisporus var. burnettii JB137-S8Agaricales
LbicLaccaria bicolor S238N-H82Agaricales

Outgroup (3)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
CneoCryptococcus neoformans H99Tremellomycetes
UmayUstilago maydis 521Ustilaginomycotina
RtorRhodotorula toruloides NP11Pucciniomycotina