Files

• Island synteny viewer
• Assembly quality QC
• frequency_table (tsv.gz)
• clade_assignments (tsv.gz)
• strain_inventory (tsv.gz)
• significant_islands (tsv.gz)
• island_pfam_enrichment (tsv.gz)
• pangenome_openness (tsv.gz)
• per_strain_summary (tsv.gz)
• classification_counts (tsv.gz)
• island_size_distribution (tsv.gz)
• marker_summary (tsv.gz)
• islands_with_domains (tsv.gz)
• assembly_quality_vs_content (tsv.gz)
• assembly_quality_correlations (tsv.gz)
• diagnostics (tsv.gz)

Pipeline diagnostics

• rescue_redundancy [TRIGGERED]: 706771/826338 (85.5%) rescuable cells overlap a predicted gene already assigned to a different family in that strain -- the same locus double-counted, not a genuine annotation dropout (issue #133).
  • prune option: do not enable rescue (--pangenome_rescue_enable false); see clustering sweep #132 before re-enabling
  • prune option: verify --pangenome_rescue_structural_filter is enabled (default true) -- it is the mechanism that removes these cells, not merely detects them
• assembly_quality_confound [OK]: max |rho| = 0.25 (rho = 0.2456, accessory_present vs n50 (raw), n = 45 strains); threshold 0.3. See assembly_quality_report.md (issue #130).
• clade_structure_validity [not computed]: trips when: PCoA1 variance share < ~50%, split-half ARI < 0.8, or between/within clade distance ratio < ~2. Not yet computed by this pipeline -- see #131.
• gain_loss_skew [not computed]: trips when: gain:loss ratio > 20:1 or ambiguous-polarity fraction < 2%. Not yet computed by this pipeline -- see issue #134's calibration reference.

Pangenome Island + Pfam Enrichment Report

Pangenome composition

Ingroup (23377 gene families)

• core: 7071 (30.2%)
• soft_core: 698 (3.0%)
• shell: 4348 (18.6%)
• cloud: 4874 (20.8%)
• singleton: 6386 (27.3%)

Not counted in this group's classes:

• outgroup_only: 5836

Pangenome openness

Heaps' law fit: κ=8807.1, γ=0.300 (R²=0.978) -- pangenome is open (γ < 1).

Extrapolated asymptotic core-genome size: 3416 families.

Per-strain summary

Families per strain: min=9381, median=10205, max=11645 (n=47 strains). See per_strain_summary.tsv for outliers.

Outlier strains (singleton-count modified z-score beyond threshold): Asfu_UD1, Asfu_E1202, Asfu_D223L5, Asfu_A1163, Asfu_C172L1, Asfu_Af293, Asfu_08190230, Asfu_H237, Asfu_ATCC_46645

The outgroup has too few representative genomes to bin on its own; outgroup genomes use ingroup classes.

Ingroup vs outgroup content

Not shown: the outgroup is not binned (too few representative genomes).

Accessory islands

2859 statistically significant accessory islands found (built from adjacency of non-core genes, gated by containing at least one FDR-significant physically-linked pair).

Top islands (by size):

1678 single-strain islands excluded (present in one strain only -- strain-private content, which dominates the size ranking).

Locus (strain:contig:start-end)	Families (#)	Span (kb)	Strains (#)	Pfam domains
Asfu_A249L5:JAIBUS010000019.1:58994-148242	38	89.2	2	Acetyltransf_1, Acetyltransf_10, Acetyltransf_7, Ank, Ank_2, Ank_3, Ank_4, Ank_5, Ank_KRIT1, Aspzincin_M35, DUF3435, DUF3723, DUF3723_N, FAD_binding_3, FAD_binding_8, Ferric_reduct, Fic, Glyco_hydro_71, HATPase_c, HisKA, Lipase_GDSL, Lipase_GDSL_2, NAD_binding_6, NPHP3_N, PNP_UDP_1, Patatin, Pkinase, Response_reg, SPOK2_N
Asfu_B166s1:JAIBRN010000015.1:2823-83876	26	81.1	2	APH, BTB, Chitin_bind_1, Choline_kinase, DUF3435, DUF6914, DUF7779, Glyco_hydro_18, Kdo, LysM4_N, Myb_DNA-bind_6, Myb_DNA-binding, PGAP1, SPOK2_N, TPR_10, TPR_12
Asfu_C199L2:JAIBUM010000151.1:3950-52490	22	48.5	2	APH, Ank, Ank_2, Ank_3, Ank_4, Ank_5, Ank_KRIT1, Apolipoprotein, DDE_1, DUF4246, DUF4246_N, GH16_XgeA, Glyco_hydro_71, HTH_Tnp_Tc5, HTH_psq, LysM11_C, LysM11_ab, NACHT, NPHP3_N, OPT, PNP_UDP_1, SUR7
Asfu_NRZ2017283:JAIBTJ010000135.1:2263-54148	22	51.9	2	APH, Ank, Ank_2, Ank_3, Ank_4, Ank_5, Ank_KRIT1, DDE_1, DUF4246, DUF4246_N, DUF6540, DUF6914, GH16_XgeA, Glyco_hydro_71, HTH_Tnp_Tc5, HTH_psq, LysM11_C, LysM11_ab, NACHT, NPHP3_N, OPT, PNP_UDP_1, SUR7, WHD_GPIID
Asfu_NRZ2018281:JAIBSR010000099.1:127-44545	18	44.4	2	ADH_N, ADH_zinc_N, CBM_20, DUF3435, F-box-like, Glu_dehyd_C, Glyco_hydro_15, Patatin, Rad60-SLD, SUR7, ubiquitin
Asfu_K14s1_2:JAIBXU010000254.1:371-34944	16	34.6	2	Ank_2, Ank_5, DUF7587, DUF8568, Dynamin_M, Dynamin_N, HAC6_N, HAC6_helical, HSF_DNA-bind, HSP70, PK_Tyr_Ser-Thr, Pkinase
Asfu_A234L2:JAIBUJ010000252.1:913-36288	14	35.4	3	Ank, Ank_2, Ank_3, Ank_4, Ank_5, Ank_KRIT1, DUF4246, DUF4246_N, GH16_XgeA, Glyco_hydro_71, LysM11_C, LysM11_ab, NACHT, NPHP3_N, OPT, PNP_UDP_1, SUR7
Asfu_A234L2:JAIBUJ010000133.1:27351-61607	13	34.3	2	ACP_SdgA_C, Acyl_transf_1, CurL-like_PKS_C, DAO, Epimerase, FAD_binding_2, FAD_binding_3, FAD_oxidored, GIDA, HI0933_like, HsbA, KAsynt_C_assoc, KR, Ketoacyl-synt_C, MFS_1, NAD_binding_10, NAD_binding_4, NAD_binding_8, NmrA, PP-binding, Phe_hydrox_dim, Pyr_redox_2, RhiE-like_linker, SAT, Thiolase_N, Zn_clus, adh_short, adh_short_C2, ketoacyl-synt
Asfu_D22s3:JAIBRX010000200.1:2473-41496	12	39.0	3	ACP_SdgA_C, AMP-binding, Acyl_transf_1, Amidase, Condensation, CurL-like_PKS_C, Epimerase, Fungal_trans, Fungal_trans_2, HpcH_HpaI, KAsynt_C_assoc, KR, Ketoacyl-synt_C, MFS_1, Methyltransf_11, Methyltransf_12, Methyltransf_23, Methyltransf_25, Methyltransf_31, NAD_binding_4, PKS_DH_N, PP-binding, PS-DH, Pkinase, RhiE-like_linker, RraA-like, TRI12, Thiolase_N, Ubie_methyltran, Zn_clus, adh_short, adh_short_C2, ketoacyl-synt
Asfu_E1462:JAIBWV010000295.1:502-18718	12	18.2	2	AAA_16, AAA_22, Ank, Ank_2, Ank_4, Ank_5, Ank_KRIT1, DUF3723, DUF3723_N, NACHT, NPHP3_N, PNP_UDP_1, Pkinase, RNase_H, RVT_1, ResIII, WHD_GPIID
Asfu_I1192:JAIBXF010000131.1:29960-51655	12	21.7	2	APH, Amidase, Glyco_hydro_10, Methyltransf_11, Methyltransf_12, Methyltransf_23, Methyltransf_25, Methyltransf_31, MoCF_biosynth, MoeA_C, MoeA_N, Molybdopterin, Molydop_binding, NTP_transf_3
Asfu_K148s1:JAIBWA010000101.1:67181-85553	12	18.4	2	ATP_transf, Ap4A_phos_N, Epimerase, FAA_hydrolase, FAD_binding_2, FAD_binding_3, Fungal_trans, GDP_Man_Dehyd, NAD_binding_8, NmrA, Pyr_redox_3, Thi4, adh_short, adh_short_C2
Asfu_NRZ2014065:JAIBTL010000115.1:29960-51655	11	21.7	3	APH, Amidase, Glyco_hydro_10, Methyltransf_11, Methyltransf_12, Methyltransf_23, Methyltransf_25, Methyltransf_31, MoCF_biosynth, MoeA_C, MoeA_N, Molybdopterin, Molydop_binding, NTP_transf_3
Asfu_A234L2:JAIBUJ010000398.1:481-18264	11	17.8	2	AAA_16, AAA_22, Ank, Ank_2, Ank_4, Ank_5, Ank_KRIT1, DUF3723, DUF3723_N, NACHT, NPHP3_N, PNP_UDP_1, Pkinase, ResIII, WHD_GPIID
Asfu_E166s1:JAIBUT010000161.1:2109-39588	11	37.5	2	ACP_SdgA_C, AMP-binding, Acyl_transf_1, Amidase, Condensation, CurL-like_PKS_C, Epimerase, Fungal_trans, Fungal_trans_2, KAsynt_C_assoc, KR, Ketoacyl-synt_C, MFS_1, Methyltransf_11, Methyltransf_12, Methyltransf_23, Methyltransf_25, Methyltransf_31, NAD_binding_4, PKS_DH_N, PP-binding, PS-DH, Pkinase, RhiE-like_linker, RraA-like, TRI12, Thiolase_N, Ubie_methyltran, Zn_clus, adh_short, adh_short_C2, ketoacyl-synt
Asfu_0030661546_AFU_2506:JAKNCZ010000051.1:53528-87378	10	33.9	17	Aa_trans, Aldedh, Aldolase_II, Amino_oxidase, ApbA, ApbA_C, DAO, FAD-oxidase_C, FAD_binding_2, FAD_binding_3, FAD_binding_4, FAD_oxidored, FMN_dh, Fungal_trans_2, Glu_synthase, IMPDH, Lycopene_cycl, NAD_binding_8, Ribonuc_L-PSP, Thi4, Zn_clus
Asfu_A234L2:JAIBUJ010000237.1:559-39622	10	39.1	3	ACP_SdgA_C, AMP-binding, Acyl_transf_1, Amidase, Condensation, CurL-like_PKS_C, Epimerase, Fungal_trans, Fungal_trans_2, HpcH_HpaI, KAsynt_C_assoc, KR, Ketoacyl-synt_C, MFS_1, Methyltransf_11, Methyltransf_12, Methyltransf_23, Methyltransf_25, Methyltransf_31, NAD_binding_4, PKS_DH_N, PP-binding, PS-DH, Pkinase, RhiE-like_linker, RraA-like, TRI12, Thiolase_N, Ubie_methyltran, Zn_clus, adh_short, adh_short_C2, ketoacyl-synt
Asfu_B166s1:JAIBRN010000033.1:10875-30336	10	19.5	3	AA_permease, AA_permease_2, ABC_membrane, ABC_tran, AMP-binding, ATPgrasp_N
Asfu_I1192:JAIBXF010000174.1:1040-28558	10	27.5	3	Ble-like_N, Fungal_trans, Glyoxalase, Glyoxalase_4, PRISE, Zn_clus
Asfu_C127s1:JAIBQT010000290.1:3204-20349	10	17.1	2	3Beta_HSD, ATP_transf, Ap4A_phos_N, Epimerase, FAA_hydrolase, FAD_binding_2, FAD_binding_3, Fungal_trans, GDP_Man_Dehyd, Glyoxalase, NAD_binding_10, NAD_binding_8, NmrA, Pyr_redox_3, Thi4, adh_short, adh_short_C2

Pair classification breakdown

• trans_unconfirmed: 57601
• trans: 6116
• unexplained_physical: 2964
• insufficient_data: 2454
• ambiguous_linkage: 882

Trans-module genomic clustering

Scale: same contig, at least 11 genes apart, gene starts within max 100 kb. Null: accessory genes of the same strain, 200 permutations, seed 0. Pairs on different contigs are excluded, not counted as distant. With millions of pairs a tiny effect still reaches the smallest possible p, so read the effect ratio first.

Module	Families	Strains	Obs. frac (same contig)	Null	Effect	p	Effect (all pairs)	p (all pairs)	Cross-contig excluded
0	261	47	0.476	0.427	1.11	0.005	1.22	0.005	99.3%
1	243	47	0.308	0.254	1.21	0.005	1.20	0.010	98.6%
10	67	37	0.368	0.173	2.13	0.005	4.20	0.005	89.9%
100	3	7	-	0.060	-	-	0.00	1.000	100.0%
101	3	29	-	0.104	-	-	0.00	1.000	61.0%
102	3	15	1.000	0.656	1.52	0.667	285.71	0.005	0.0%
103	3	7	-	0.087	-	-	0.00	1.000	100.0%
104	3	5	-	0.667	-	-	0.00	1.000	100.0%
105	3	35	-	0.119	-	-	0.00	1.000	72.2%
106	3	3	0.000	0.074	0.00	1.000	0.00	1.000	0.0%
107	3	5	-	0.136	-	-	0.00	1.000	44.4%
108	3	19	1.000	0.457	2.19	0.472	388.24	0.005	3.9%
109	3	11	-	0.043	-	-	0.00	1.000	100.0%
11	66	28	0.682	0.127	5.36	0.005	22.45	0.005	75.8%
110	3	33	-	0.145	-	-	0.00	1.000	100.0%
111	3	27	-	0.052	-	-	0.00	1.000	100.0%
112	3	37	0.000	0.106	0.00	1.000	0.00	1.000	93.8%
113	2	5	0.000	0.148	0.00	1.000	0.00	1.000	80.0%
114	2	15	1.000	0.679	1.47	0.667	160.00	0.005	46.7%
115	2	6	1.000	0.600	1.67	0.667	333.33	0.005	16.7%
116	2	9	-	0.222	-	-	0.00	1.000	100.0%
117	2	36	-	0.423	-	-	0.00	1.000	100.0%
118	2	34	0.000	0.170	0.00	1.000	0.00	1.000	91.2%
119	2	2	-	1.000	-	-	0.00	1.000	100.0%
12	65	47	0.489	0.082	6.00	0.005	9.28	0.005	87.5%
120	2	9	-	0.400	-	-	0.00	1.000	100.0%
121	2	11	-	0.121	-	-	0.00	1.000	100.0%
122	2	10	-	0.444	-	-	0.00	1.000	100.0%
123	2	6	-	0.750	-	-	0.00	1.000	100.0%
124	2	17	-	0.333	-	-	0.00	1.000	100.0%
125	2	1	-	0.053	-	-	0.00	1.000	100.0%
126	2	7	0.000	0.046	0.00	1.000	0.00	1.000	42.9%
127	2	26	-	0.104	-	-	0.00	1.000	100.0%
128	2	8	-	0.138	-	-	0.00	1.000	100.0%
129	2	31	0.000	0.083	0.00	1.000	0.00	1.000	67.7%
13	59	45	0.530	0.087	6.09	0.005	12.99	0.005	82.5%
130	2	1	-	0.000	-	-	-	1.000	100.0%
131	2	27	-	0.169	-	-	0.00	1.000	100.0%
132	2	12	0.000	0.529	0.00	1.000	0.00	1.000	50.0%
133	2	28	-	0.124	-	-	0.00	1.000	100.0%
135	2	1	-	0.071	-	-	0.00	1.000	100.0%
136	2	3	0.000	0.041	0.00	1.000	0.00	1.000	66.7%
137	2	34	1.000	0.098	10.19	0.075	476.92	0.005	8.8%
138	2	13	-	0.286	-	-	0.00	1.000	100.0%
139	2	35	-	0.103	-	-	0.00	1.000	100.0%
14	56	47	0.788	0.169	4.65	0.005	21.60	0.005	74.5%
140	2	14	1.000	0.116	8.60	0.136	520.00	0.005	7.1%
141	2	37	-	0.220	-	-	0.00	1.000	100.0%
142	2	15	-	0.600	-	-	0.00	1.000	100.0%
143	2	6	-	0.600	-	-	0.00	1.000	100.0%
144	2	13	-	0.571	-	-	0.00	1.000	100.0%
145	2	13	-	0.571	-	-	0.00	1.000	100.0%
146	2	12	-	0.308	-	-	0.00	1.000	100.0%
147	2	33	-	0.120	-	-	0.00	1.000	100.0%
148	2	11	0.000	0.097	0.00	1.000	0.00	1.000	90.9%
149	2	24	-	0.533	-	-	0.00	1.000	100.0%
15	44	46	0.207	0.117	1.77	0.005	1.80	0.005	95.6%
150	2	2	-	0.500	-	-	0.00	1.000	100.0%
151	2	24	1.000	0.833	1.20	0.846	460.00	0.005	4.2%
152	2	17	-	0.090	-	-	0.00	1.000	100.0%
153	2	6	-	0.500	-	-	0.00	1.000	100.0%
154	2	11	-	0.733	-	-	0.00	1.000	100.0%
155	2	5	-	0.667	-	-	0.00	1.000	100.0%
156	2	6	-	0.286	-	-	0.00	1.000	100.0%
157	2	7	-	0.857	-	-	0.00	1.000	100.0%
158	2	7	1.000	0.200	5.00	0.333	800.00	0.005	42.9%
16	37	46	0.644	0.275	2.35	0.005	3.40	0.005	98.1%
160	2	13	-	0.500	-	-	0.00	1.000	100.0%
161	2	16	-	0.750	-	-	0.00	1.000	100.0%
162	2	9	-	0.667	-	-	0.00	1.000	100.0%
163	2	5	-	0.000	-	-	-	1.000	100.0%
165	2	11	-	0.059	-	-	0.00	1.000	100.0%
166	2	15	1.000	0.444	2.25	0.500	750.00	0.005	0.0%
167	2	10	-	0.455	-	-	0.00	1.000	100.0%
168	2	6	-	0.058	-	-	0.00	1.000	100.0%
169	2	1	-	-	-	-	-	1.000	100.0%
17	34	16	0.600	0.128	4.68	0.005	14.79	0.005	77.4%
170	2	3	-	0.333	-	-	0.00	1.000	100.0%
171	2	10	1.000	0.833	1.20	0.857	400.00	0.005	0.0%
172	2	8	1.000	0.429	2.33	0.500	466.67	0.005	12.5%
173	2	17	-	0.049	-	-	0.00	1.000	100.0%
174	2	1	-	0.000	-	-	-	1.000	100.0%
177	2	2	0.000	0.009	0.00	1.000	0.00	1.000	50.0%
178	2	5	-	0.750	-	-	0.00	1.000	100.0%
179	2	5	-	0.087	-	-	0.00	1.000	100.0%
18	32	46	0.079	0.070	1.14	0.303	1.25	0.144	91.7%
180	2	6	-	0.667	-	-	0.00	1.000	100.0%
181	2	11	-	0.800	-	-	0.00	1.000	100.0%
182	2	4	-	1.000	-	-	0.00	1.000	100.0%
183	2	4	1.000	1.000	1.00	1.000	66.67	0.020	75.0%
186	2	12	-	0.068	-	-	0.00	1.000	100.0%
187	2	2	-	0.500	-	-	0.00	1.000	100.0%
188	2	12	-	0.800	-	-	0.00	1.000	100.0%
189	2	10	-	0.750	-	-	0.00	1.000	100.0%
19	31	47	0.717	0.398	1.80	0.005	27.01	0.005	89.6%
190	2	5	-	0.750	-	-	0.00	1.000	100.0%
191	2	5	-	0.100	-	-	0.00	1.000	100.0%
192	2	2	-	0.667	-	-	0.00	1.000	100.0%
193	2	3	-	-	-	-	-	1.000	100.0%
194	2	11	-	0.200	-	-	0.00	1.000	100.0%
196	2	6	-	0.857	-	-	0.00	1.000	100.0%
197	2	14	-	0.333	-	-	0.00	1.000	100.0%
198	2	21	-	0.090	-	-	0.00	1.000	100.0%
199	2	4	-	0.000	-	-	-	1.000	100.0%
2	192	47	0.058	0.062	0.94	0.836	1.03	0.299	92.5%
20	28	47	0.086	0.314	0.27	1.000	0.23	1.000	97.5%
201	2	3	-	0.042	-	-	0.00	1.000	100.0%
202	2	37	-	0.102	-	-	0.00	1.000	100.0%
203	2	4	-	-	-	-	-	1.000	100.0%
204	2	5	-	0.667	-	-	0.00	1.000	100.0%
205	2	18	-	0.412	-	-	0.00	1.000	100.0%
206	2	14	-	0.500	-	-	0.00	1.000	100.0%
207	2	11	-	0.667	-	-	0.00	1.000	100.0%
208	2	6	-	0.667	-	-	0.00	1.000	100.0%
209	2	5	-	0.333	-	-	0.00	1.000	100.0%
21	18	45	0.764	0.247	3.09	0.005	6.38	0.005	96.3%
211	2	13	-	0.375	-	-	0.00	1.000	100.0%
212	2	9	-	0.667	-	-	0.00	1.000	100.0%
213	2	6	-	0.500	-	-	0.00	1.000	100.0%
214	2	33	0.000	0.159	0.00	1.000	0.00	1.000	87.9%
215	2	2	-	0.082	-	-	0.00	1.000	100.0%
216	2	26	1.000	0.104	9.63	0.071	253.79	0.005	20.7%
217	2	7	0.000	0.069	0.00	1.000	0.00	1.000	85.7%
218	2	6	-	0.333	-	-	0.00	1.000	100.0%
219	2	2	0.000	0.048	0.00	1.000	0.00	1.000	0.0%
22	16	36	0.966	0.246	3.93	0.005	69.94	0.005	77.3%
220	2	1	-	1.000	-	-	0.00	1.000	100.0%
221	2	3	-	0.032	-	-	0.00	1.000	100.0%
222	2	6	-	1.000	-	-	0.00	1.000	100.0%
223	2	15	-	0.096	-	-	0.00	1.000	100.0%
224	2	1	-	0.059	-	-	0.00	1.000	100.0%
225	2	8	-	0.500	-	-	0.00	1.000	100.0%
226	2	7	0.000	0.231	0.00	1.000	0.00	1.000	85.7%
227	2	10	1.000	0.203	4.92	0.212	114.29	0.005	60.0%
228	2	15	-	0.800	-	-	0.00	1.000	100.0%
229	2	6	-	0.917	-	-	0.00	1.000	100.0%
23	15	31	0.346	0.074	4.65	0.005	4.97	0.005	87.9%
230	2	6	-	0.000	-	-	-	1.000	100.0%
231	2	1	0.000	0.100	0.00	1.000	0.00	1.000	0.0%
232	2	1	-	0.050	-	-	0.00	1.000	100.0%
233	2	1	-	-	-	-	-	1.000	100.0%
234	2	9	-	0.121	-	-	0.00	1.000	100.0%
235	2	1	0.000	0.000	-	1.000	-	1.000	0.0%
236	2	39	-	0.224	-	-	0.00	1.000	100.0%
237	2	3	-	0.000	-	-	-	1.000	100.0%
238	2	41	-	0.140	-	-	0.00	1.000	100.0%
239	2	28	-	0.542	-	-	0.00	1.000	100.0%
24	15	43	0.828	0.359	2.31	0.005	31.91	0.005	81.1%
240	2	12	-	0.333	-	-	0.00	1.000	100.0%
241	2	30	-	0.110	-	-	0.00	1.000	100.0%
242	2	31	-	0.157	-	-	0.00	1.000	100.0%
243	2	1	-	0.038	-	-	0.00	1.000	100.0%
244	2	10	-	0.059	-	-	0.00	1.000	100.0%
245	2	12	-	0.065	-	-	0.00	1.000	100.0%
25	12	27	0.000	0.318	0.00	1.000	0.00	1.000	97.0%
26	12	30	0.770	0.245	3.14	0.010	63.90	0.005	61.7%
27	11	34	0.000	0.149	0.00	1.000	0.00	1.000	98.3%
28	9	33	1.000	0.227	4.40	0.005	123.64	0.005	25.5%
29	9	40	0.908	0.128	7.07	0.005	60.07	0.005	70.0%
3	161	46	0.623	0.172	3.63	0.005	7.34	0.005	90.8%
30	8	35	0.000	0.094	0.00	1.000	0.00	1.000	84.1%
31	8	13	-	0.612	-	-	0.00	1.000	95.2%
32	7	21	0.583	0.066	8.80	0.005	19.07	0.005	90.6%
33	7	30	0.814	0.083	9.78	0.005	29.30	0.005	72.9%
34	7	39	0.000	0.095	0.00	1.000	0.00	1.000	92.8%
35	7	7	0.667	0.057	11.69	0.021	30.48	0.005	80.0%
36	7	26	0.692	0.140	4.94	0.027	43.37	0.005	31.5%
37	7	12	-	0.513	-	-	0.00	1.000	92.9%
38	6	9	1.000	0.086	11.62	0.056	23.53	0.005	47.4%
39	6	41	0.562	0.147	3.82	0.015	21.43	0.005	81.8%
4	134	47	0.646	0.167	3.87	0.005	12.34	0.005	89.1%
40	6	39	0.000	0.121	0.00	1.000	0.00	1.000	97.4%
41	6	12	0.000	0.092	0.00	1.000	0.00	1.000	86.1%
42	6	19	0.000	0.133	0.00	1.000	0.00	1.000	89.9%
43	6	7	-	0.559	-	-	0.00	1.000	38.4%
44	6	26	1.000	0.295	3.39	0.161	179.54	0.005	36.7%
45	5	9	0.000	0.226	0.00	1.000	0.00	1.000	82.1%
46	5	37	0.000	0.086	0.00	1.000	0.00	1.000	97.7%
47	5	34	-	0.087	-	-	0.00	1.000	100.0%
48	5	38	-	0.137	-	-	0.00	1.000	78.1%
49	4	36	0.000	0.285	0.00	1.000	0.00	1.000	98.8%
5	113	47	0.278	0.219	1.27	0.010	1.41	0.005	97.8%
50	4	8	-	0.385	-	-	0.00	1.000	100.0%
51	4	36	0.000	0.087	0.00	1.000	0.00	1.000	60.8%
52	4	18	-	0.394	-	-	0.00	1.000	77.6%
53	4	3	-	0.028	-	-	0.00	1.000	100.0%
54	4	10	-	0.857	-	-	0.00	1.000	100.0%
55	4	35	0.000	0.088	0.00	1.000	0.00	1.000	45.5%
56	4	5	1.000	0.055	18.23	0.050	66.67	0.005	25.0%
57	4	41	-	0.107	-	-	0.00	1.000	100.0%
58	4	17	1.000	0.095	10.55	0.085	342.86	0.005	29.4%
59	4	23	0.810	0.152	5.34	0.051	60.71	0.005	68.2%
6	104	47	0.266	0.179	1.49	0.005	1.93	0.005	97.8%
60	4	38	-	0.135	-	-	0.00	1.000	100.0%
61	4	25	-	0.251	-	-	0.00	1.000	100.0%
62	4	7	-	0.115	-	-	0.00	1.000	100.0%
63	4	14	-	0.127	-	-	0.00	1.000	36.4%
64	4	34	0.612	0.095	6.46	0.015	197.41	0.005	6.7%
65	4	8	-	0.049	-	-	0.00	1.000	100.0%
66	4	36	-	0.293	-	-	0.00	1.000	100.0%
67	3	7	-	0.048	-	-	0.00	1.000	100.0%
68	3	7	-	0.130	-	-	0.00	1.000	100.0%
69	3	17	1.000	0.528	1.89	0.526	340.00	0.005	0.0%
7	98	47	0.433	0.383	1.13	0.035	2.37	0.005	98.4%
70	3	6	-	0.071	-	-	0.00	1.000	100.0%
71	3	41	-	0.365	-	-	0.00	1.000	100.0%
72	3	37	-	0.193	-	-	0.00	1.000	100.0%
73	3	8	0.000	0.062	0.00	1.000	0.00	1.000	90.9%
74	3	25	0.000	0.136	0.00	1.000	0.00	1.000	73.0%
75	3	30	0.000	0.104	0.00	1.000	0.00	1.000	50.0%
76	3	30	-	0.128	-	-	0.00	1.000	100.0%
77	3	33	-	0.146	-	-	0.00	1.000	100.0%
78	3	14	-	0.084	-	-	0.00	1.000	67.6%
79	3	31	1.000	0.121	8.24	0.042	92.59	0.005	62.7%
8	90	47	0.502	0.506	0.99	0.512	2.21	0.005	98.9%
80	3	36	-	0.080	-	-	0.00	1.000	65.4%
81	3	19	1.000	0.069	14.57	0.041	120.00	0.005	59.5%
82	3	13	0.000	0.076	0.00	1.000	0.00	1.000	57.1%
83	3	6	1.000	0.075	13.40	0.074	33.33	0.035	16.7%
84	3	37	-	0.103	-	-	0.00	1.000	65.4%
85	3	33	-	0.259	-	-	0.00	1.000	100.0%
86	3	34	-	0.112	-	-	0.00	1.000	67.0%
87	3	8	-	0.087	-	-	0.00	1.000	90.0%
88	3	8	0.000	0.074	0.00	1.000	0.00	1.000	88.9%
89	3	28	1.000	0.206	4.85	0.162	165.52	0.005	68.4%
9	76	47	0.210	0.063	3.34	0.005	4.13	0.005	91.7%
90	3	3	-	1.000	-	-	0.00	1.000	100.0%
91	3	15	-	0.947	-	-	0.00	1.000	100.0%
92	3	5	-	0.167	-	-	0.00	1.000	100.0%
93	3	37	-	0.098	-	-	0.00	1.000	14.0%
94	3	8	-	0.043	-	-	0.00	1.000	100.0%
95	3	33	-	0.096	-	-	0.00	1.000	5.7%
96	3	2	-	1.000	-	-	0.00	1.000	100.0%
97	3	9	-	0.667	-	-	0.00	1.000	100.0%
98	3	15	0.000	0.085	0.00	1.000	0.00	1.000	65.1%
99	3	36	0.000	0.106	0.00	1.000	0.00	1.000	95.0%

Pfam domain enrichment

Domain	Fisher p	FDR q
DUF3435	1.02e-08	1.49e-05
HSF_DNA-bind	5.96e-08	4.33e-05
DDE_1	3.53e-05	1.71e-02
HsbA	6.62e-05	2.28e-02
DUF3723	7.83e-05	2.28e-02