metric value source antismash_version 8.0.4 Af293.json.gz af293_cds_in_antismash 9630 CDS features in antiSMASH JSON (from GFF3) af293_cds_mapped_to_member 9627 coord:9623; fasta_GN:4; none:3 af293_cds_with_family 9627 member in tier1_cluster.tsv sm_clusters 44 antiSMASH regions (sm_clusters.tsv.gz) sm_cluster_genes 873 CDS inside regions sm_core_genes 66 CDS with a rule definition domain sm_clusters_contig_edge 3 region qualifier contig_edge starship_elements 8 Table S7 (inputs/af293_starships_table_s7.elements.tsv) af293_cds_in_starships 177 CDS midpoint inside an element sm_clusters_overlap_ge1gene 3 rule A (sm_clusters.tsv.gz) sm_clusters_overlap_ge50pct 1 rule B (sm_clusters.tsv.gz) sm_clusters_with_captain 3 DUF3435 hit E<=1e-5 in a cluster gene af293_captain_cds 7 Af293 CDS whose member has a DUF3435 hit elements_with_sm_cluster_ge1gene 3 sm_starship_overlap.tsv elements_with_sm_cluster_ge50pct 1 sm_starship_overlap.tsv perm_clusters_overlap_ge1gene_observed 3 sm_permutation.tsv perm_clusters_overlap_ge1gene_null_mean 1.884 sm_permutation.tsv perm_clusters_overlap_ge1gene_p_greater 0.28272 sm_permutation.tsv perm_clusters_overlap_ge1gene_p_less 0.8951 sm_permutation.tsv perm_clusters_overlap_ge50pct_observed 1 sm_permutation.tsv perm_clusters_overlap_ge50pct_null_mean 1.206 sm_permutation.tsv perm_clusters_overlap_ge50pct_p_greater 0.71528 sm_permutation.tsv perm_clusters_overlap_ge50pct_p_less 0.64036 sm_permutation.tsv perm_sm_cluster_genes_in_elements_observed 28 sm_permutation.tsv perm_sm_cluster_genes_in_elements_null_mean 24.019 sm_permutation.tsv perm_sm_cluster_genes_in_elements_p_greater 0.38262 sm_permutation.tsv perm_sm_cluster_genes_in_elements_p_less 0.63636 sm_permutation.tsv hypergeom_sm_cluster_genes_in_starships_N 9630 universe: all Af293 CDS hypergeom_sm_cluster_genes_in_starships_K 177 universe: all Af293 CDS hypergeom_sm_cluster_genes_in_starships_n 873 universe: all Af293 CDS hypergeom_sm_cluster_genes_in_starships_k 28 universe: all Af293 CDS hypergeom_sm_cluster_genes_in_starships_expected 16.05 universe: all Af293 CDS hypergeom_sm_cluster_genes_in_starships_fold 1.75 universe: all Af293 CDS hypergeom_sm_cluster_genes_in_starships_p_greater 0.00247 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_N 9630 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_K 177 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_n 66 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_k 2 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_expected 1.21 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_fold 1.65 universe: all Af293 CDS hypergeom_sm_core_genes_in_starships_p_greater 0.343 universe: all Af293 CDS hypergeom_core_families_in_islands_noncore_N 40122 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_core_families_in_islands_noncore_K 15 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_core_families_in_islands_noncore_n 11683 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_core_families_in_islands_noncore_k 10 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_core_families_in_islands_noncore_expected 4.37 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_core_families_in_islands_noncore_fold 2.29 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_core_families_in_islands_noncore_p_greater 0.00286 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_N 40122 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_K 310 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_n 11683 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_k 212 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_expected 90.27 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_fold 2.35 universe: non-core families; K = SM families (Af293 genes); n = island families hypergeom_cluster_gene_families_in_islands_noncore_p_greater 1.39e-46 universe: non-core families; K = SM families (Af293 genes); n = island families sm_core_families 65 families of core genes (sm_core_families.tsv.gz) sm_core_families_noncore 15 sm_core_families_noncore_in_island 10 proxy_backbone_genes 32 full_v072/with_unplaced_af293_coords/sm_backbone_af293_genes.tsv.gz proxy_backbone_genes_in_antismash_region 28 proxy gene member -> locus tag in a region proxy_backbone_genes_antismash_core 27 proxy gene is an antiSMASH core gene proxy_backbone_genes_in_starships 2 proxy result