derived_by: bin/starship_island_overlap.py
date: 2026-10-17
command: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/bin/starship_island_overlap.py --run-dir /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome --starship-annotation /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/analysis/starship_island_overlap/inputs/af293_starships_table_s7.elements.tsv --captain-tblout /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/captain_gene/DUF3435_vs_study.tblout --gain-loss /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/analysis/gain_loss/full_v072/family_gain_loss.tsv.gz --run-label full_v072 --out-dir /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/analysis/starship_island_overlap/full_v072
parameters: {min_carriers: 5, captain_evalue: 1e-05, n_perm: 1000, seed: 20261017}
inputs:
  frequency_table:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome/frequency_table.tsv
    sha256: 531f4e90c22fcf3296e2de84fb1764d5120d612109a78b186b59e6674f1dbbd9
  significant_islands:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome/significant_islands.tsv
    sha256: 2d49972a2e7d6302d4c6e453cef8c7dc3d16adc43c206a5231cf5f87ec403201
  tier1_cluster:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome/cluster/tier1_cluster.tsv
    sha256: a4a97c9fd1ee041f1fd3e60e5c20651c3eda94a348df2e074e4cd6c2ecaec189
  gene_positions:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome/gene_positions.tsv.zst
    sha256: 1c3063d8bb2bbac4d02dba30ccf64fa675d4287ed4f72818465c901e38759aa7
  family_positions:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome/family_positions.tsv.zst
    sha256: dcc5cc53209cb08350952cfc26e0043aaaeb1882e164abee70c272e11c27df4e
  rescue_positions:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/full_v072/config/pangenome/rescue_positions.tsv
    sha256: 48d92957e89f5b3377d16e8e3470141dfc8d7289fd39c39f35e9e842aa3d1fd0
  starship_annotation:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/analysis/starship_island_overlap/inputs/af293_starships_table_s7.elements.tsv
    sha256: 285270131d443597ce67cc7c9559b0eec722eaedbe1e0641adae504faed2f493
  captain_tblout:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/results/captain_gene/DUF3435_vs_study.tblout
    sha256: 11ef6436a703329c1dd04c995f09951e08f03aeb153036800eab6577126e2c4f
  gain_loss:
    path: /bigdata/stajichlab/jstajich/projects/NovInvenio_Investigations/studies/fungi/Afumigatus_pangenome/analysis/gain_loss/full_v072/family_gain_loss.tsv.gz
    sha256: 6769be90cf6a679b168a3798f35790cfe0ab5adf31e449d2ab659b97e1d6c6e2