pezizo_set1 — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
5
Outgroup proteomes
6
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95

Ingroup (5)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
AmegaArthrobotrys megalospora TWF281Pezizomycotina
NcraNeurospora crassa OR74APezizomycotina
AfumAspergillus fumigatus Af293Pezizomycotina
ZtriZymoseptoria tritici IPO323Pezizomycotina
CimmCoccidioides immitis RSPezizomycotina

Outgroup (6)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
NirrNeolecta irregularis DAH-3Taphrinomycotina
CneoH99Cryptococcus neoformans H99Basidiomycota
CcinCoprinopsis cinerea Okayama-7/130Basidiomycota
McirMucor circinelloides 1006PhLMucoromycotina
SpomSchizosaccharomyces pombe 972hTaphrinomycotina
ScerSaccharomyces cerevisiae S288CSaccharomycotina