UHM_lachnoNovelclade — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup. Functional enrichment (novelty)Pfam term enrichment of the novelty candidates against the proteome background. InterPro and GO: not available. Functional enrichment (loss)Pfam term enrichment of the loss candidates against the proteome background. InterPro and GO: not available.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
5
Outgroup proteomes
4
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95

Ingroup (5)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
Ub71Lachnospiraceae sp. UHM207.23041__UHM207.23041_R.bin.71Lachnospiraceae
Lsp1Lacrimispora sp.Lachnospiraceae
LsphLacrimispora sphenoidesLachnospiraceae
EaspEnterocloster asparagiformisLachnospiraceae
Cami[Clostridium] aminophilumLachnospiraceae

Outgroup (4)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
Ub56Lachnospiraceae sp. UHM1088.41098__UHM1088.41098_R.bin.56Lachnospiraceae
Ub85Lachnospiraceae sp. UHM1210.23070__UHM1210.23070_R.bin.85Lachnospiraceae
Ub22Lachnospiraceae sp. UHM896.23052__UHM896.23052_R.bin.22Lachnospiraceae
Ub119Lachnospiraceae sp. UHM904.23055__UHM904.23055_R.bin.119Lachnospiraceae