gallery / domain / UHM_Koxytoca / pairwise-diamond / enrichment (novelty)

UHM Koxytoca: functional enrichment (novelty)

One-sided hypergeometric test per term; Benjamini-Hochberg FDR within each scope, level and vocabulary. Candidates are the novelty candidates: gene families present in the IN group and absent from the OUT group. Universe: proteome. Background clustered: True (84356 sequences in 8840 clusters, mmseqs easy-cluster --min-seq-id 0.3 -c 0.8). Family level: one unit per candidate family and per background cluster.

Sources: Pfam: 2026-01-27-Pfam38.2; InterPro entries: 110.0; GO: releases/2026-07-26; analysis generated 2026-10-14T21:59:54. Source tables: studies/bacteria/UHM_Koxytoca/analysis/enrichment/outputs/proteome_clustered. Full record: PROVENANCE. Run report: report.html.

Caveats

Summary figure

Enrichment summary figure for UHM_Koxytoca (novelty)

Annotation coverage

Fraction of proteins with at least one term per vocabulary. Universe = all proteins of the species; candidates = the candidate set.

SpeciesSetProteinsPfamPfam clanInterProGOAny
UHM102bin47universe508891.8%76.7%0.0%0.0%91.8%
UHM102bin47candidates4520.0%17.8%0.0%0.0%20.0%
UHM125bin22universe530592.0%76.3%0.0%0.0%92.0%
UHM125bin22candidates4316.3%16.3%0.0%0.0%16.3%
UHM125bin48universe255293.6%77.4%0.0%0.0%93.6%
UHM125bin48candidates1612.5%12.5%0.0%0.0%12.5%
UHM145bin17universe489690.0%75.4%0.0%0.0%90.0%
UHM145bin17candidates3622.2%22.2%0.0%0.0%22.2%
UHM145bin33universe495992.7%77.4%0.0%0.0%92.7%
UHM145bin33candidates4114.6%14.6%0.0%0.0%14.6%
UHM145bin28universe479691.8%76.4%0.0%0.0%91.8%
UHM145bin28candidates4214.3%14.3%0.0%0.0%14.3%
UHM17bin35universe500793.0%77.8%0.0%0.0%93.0%
UHM17bin35candidates4415.9%15.9%0.0%0.0%15.9%
UHM18bin40universe538692.9%77.5%0.0%0.0%92.9%
UHM18bin40candidates4316.3%16.3%0.0%0.0%16.3%
UHM20bin40universe521393.5%77.9%0.0%0.0%93.5%
UHM20bin40candidates4517.8%17.8%0.0%0.0%17.8%
UHM20bin12universe501493.2%78.2%0.0%0.0%93.2%
UHM20bin12candidates4415.9%15.9%0.0%0.0%15.9%
UHM22bin50universe480492.0%77.3%0.0%0.0%92.0%
UHM22bin50candidates4121.9%21.9%0.0%0.0%21.9%
UHM22bin54universe453392.3%77.2%0.0%0.0%92.3%
UHM22bin54candidates3312.1%12.1%0.0%0.0%12.1%
UHM22bin8universe492093.6%78.2%0.0%0.0%93.6%
UHM22bin8candidates4515.6%15.6%0.0%0.0%15.6%
UHM40bin4universe521893.4%78.6%0.0%0.0%93.4%
UHM40bin4candidates4517.8%17.8%0.0%0.0%17.8%
UHM40bin27universe464193.7%78.6%0.0%0.0%93.7%
UHM40bin27candidates4413.6%13.6%0.0%0.0%13.6%
UHM43bin53universe297794.8%78.4%0.0%0.0%94.8%
UHM43bin53candidates2010.0%10.0%0.0%0.0%10.0%
UHM56bin19universe480288.6%73.7%0.0%0.0%88.6%
UHM56bin19candidates3116.1%16.1%0.0%0.0%16.1%
UHM72bin19universe494292.8%77.3%0.0%0.0%92.8%
UHM72bin19candidates3915.4%15.4%0.0%0.0%15.4%
ALL_INuniverse8505392.5%77.2%0.0%0.0%92.5%
ALL_INcandidates69716.4%16.2%0.0%0.0%16.4%

Tests summary

Per vocabulary: terms with FDR < 0.05 / terms tested. Protein level counts proteins; family level counts candidate families and background clusters.

ScopeLevelCand. unitsPfam sig / testedPfam clan sig / testedInterPro sig / testedGO sig / tested
whole_setfamily650 / 6030 / 2430 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
whole_setprotein69715 / 33214 / 4340 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM102bin47family450 / 2820 / 1690 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM102bin47protein450 / 3790 / 1790 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM125bin22family430 / 3010 / 1760 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM125bin22protein430 / 3870 / 1890 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM125bin48family160 / 1410 / 1130 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM125bin48protein160 / 1840 / 1210 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM145bin17family360 / 2710 / 1640 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM145bin17protein360 / 3220 / 1720 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM145bin28family420 / 2730 / 1630 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM145bin28protein420 / 3610 / 1810 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM145bin33family410 / 3040 / 1670 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM145bin33protein410 / 3840 / 1850 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM17bin35family440 / 2960 / 1710 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM17bin35protein440 / 3930 / 1890 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM18bin40family430 / 3080 / 1760 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM18bin40protein430 / 4030 / 1900 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM20bin12family440 / 2950 / 1660 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM20bin12protein440 / 3870 / 1870 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM20bin40family440 / 3020 / 1700 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM20bin40protein450 / 4020 / 1930 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM22bin50family410 / 2940 / 1580 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM22bin50protein410 / 3600 / 1740 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM22bin54family330 / 2550 / 1540 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM22bin54protein330 / 3510 / 1820 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM22bin8family450 / 2910 / 1670 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM22bin8protein450 / 3830 / 1880 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM40bin27family440 / 2760 / 1590 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM40bin27protein440 / 3720 / 1800 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM40bin4family450 / 2960 / 1670 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM40bin4protein450 / 4010 / 1890 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM43bin53family200 / 1780 / 1190 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM43bin53protein200 / 2240 / 1320 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM56bin19family310 / 2800 / 1600 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM56bin19protein310 / 3300 / 1650 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM72bin19family390 / 2930 / 1650 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)
UHM72bin19protein390 / 3800 / 1780 / 0 (not_available_no_annotated_units)0 / 0 (not_available_no_annotated_units)

Top 25 Pfam terms (whole set, family level)

25 rows shown, ordered by FDR then p-value; 0 have FDR < 0.05 (bold).

TermNamek / N cand.n / M bgFoldFDR (BH)
PF10609ParA: NUBPL iron-transfer P-loop NTPase1 / 155 / 712494.9871.000
PF13614AAA_31: AAA domain1 / 155 / 712494.9871.000
PF13185GAF_2: GAF domain1 / 157 / 712467.8481.000
PF01656CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain1 / 1510 / 712447.4931.000
PF00296Bac_luciferase: Luciferase-like monooxygenase1 / 1512 / 712439.5781.000
PF27070HTH_Rpn_C: Rpn/YhgA-like nuclease family, C-terminal HTH domain1 / 1512 / 712439.5781.000
PF00232Glyco_hydro_1: Glycosyl hydrolase family 11 / 1513 / 712436.5331.000
PF01497Peripla_BP_2: Periplasmic binding protein1 / 1513 / 712436.5331.000
PF00291PALP: Pyridoxal-phosphate dependent enzyme1 / 1514 / 712433.9241.000
PF01590GAF: GAF domain1 / 1514 / 712433.9241.000
PF01810LysE: LysE type translocator1 / 1514 / 712433.9241.000
PF02264LamB: LamB porin1 / 1515 / 712431.6621.000
PF00293NUDIX: NUDIX domain1 / 1516 / 712429.6831.000
PF04879Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain1 / 1516 / 712429.6831.000
PF05175MTS: Methyltransferase small domain1 / 1521 / 712422.6161.000
PF13489Methyltransf_23: Methyltransferase domain1 / 1527 / 712417.591.000
PF08242Methyltransf_12: Methyltransferase domain1 / 1533 / 712414.3921.000
PF00384Molybdopterin: Molybdopterin oxidoreductase1 / 1535 / 712413.571.000
PF08241Methyltransf_11: Methyltransferase domain1 / 1541 / 712411.5841.000
PF13649Methyltransf_25: Methyltransferase domain1 / 1541 / 712411.5841.000
PF13847Methyltransf_31: Methyltransferase domain1 / 1542 / 712411.3081.000
PF00005ABC_tran: ABC transporter1 / 1594 / 71245.0521.000
PF00004AAA: ATPase family associated with various cellular activities (AAA)0 / 1526 / 71240.01.000
PF00006ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain0 / 156 / 71240.01.000
PF00009GTP_EFTU: Elongation factor Tu GTP binding domain0 / 1520 / 71240.01.000

Top 25 InterPro terms (whole set, family level)

Not available: no protein of the candidate source group has a InterPro annotation in this study (for example Pfam-only HMM annotation). No InterPro test was run.

Top 15 GO terms (whole set, family level) — secondary, computational evidence (IEA/IBA) included

Not available: no protein of the candidate source group has a GO annotation in this study (for example Pfam-only HMM annotation). No GO test was run.

Actin cytoskeleton controls

Known actin-related families and how many of their proteins pass each filter. Protein ID columns are left out.

controlpfam_idsdesc_regexIN_universeIN_in_matrixIN_pass_ingroup_rulecandidatesnear_miss_out1near_miss_out2n_UHM102bin47n_UHM125bin22n_UHM125bin48n_UHM145bin17n_UHM145bin33n_UHM145bin28n_UHM17bin35n_UHM18bin40n_UHM20bin40n_UHM20bin12n_UHM22bin50n_UHM22bin54n_UHM22bin8n_UHM40bin4n_UHM40bin27n_UHM43bin53n_UHM56bin19n_UHM72bin19n_KoxO_050916275n_KoxO_017310465n_KoxO_929608445n_KoxO_040561445n_KoxO_900083795n_KoxO_024918735n_KoxO_902162875n_KoxO_053276915n_KoxO_030343105n_KoxO_030343375n_KoxO_016734995n_KoxO_030343565n_KoxO_900083995n_KoxO_004360035n_KoxO_030344075n_KoxO_051951865
Arp2/3 ARPC2 (P34-Arc)PF040450000000000000000000000000000000000000000
Arp2/3 ARPC3 (P21-Arc)PF040620000000000000000000000000000000000000000
Arp2/3 ARPC4PF058560000000000000000000000000000000000000000
Arp2/3 ARPC5 (P16-Arc)PF046990000000000000000000000000000000000000000
Arp2/3 ARPC1 (description only)arp2/3 complex.*(41|p41|subunit 1)|ARPC10000000000000000000000000000000000000000
Arp2 / Arp3 (description only)actin-related protein (2|3)\b|\bARP[23]\b0000000000000000000000000000000000000000
WAVE complex NCKAP1PF097350000000000000000000000000000000000000000
WAVE complex CYFIP (FragX_IP)PF059940000000000000000000000000000000000000000
WAVE complex ABIPF07815|PF275940000000000000000000000000000000000000000
SCAR/WAVE (SCAR_helical)PF275690000000000000000000000000000000000000000
WASP family (WH1)PF005680000000000000000000000000000000000000000
WH2 motif (WASP, WAVE, others)PF022050000000000000000000000000000000000000000
Formin FH2PF021810000000000000000000000000000000000000000
Formin Drf_GBD / Drf_FH3 / Drf_DADPF06371|PF06367|PF063450000000000000000000000000000000000000000
Ena/VASP (VASP_tetra)PF087760000000000000000000000000000000000000000
Coronin (description only)coronin0000000000000000000000000000000000000000
Cortactin (HS1_rep)PF022180000000000000000000000000000000000000000
Myosin 2 tail (Myosin_tail_1)PF015760000000000000000000000000000000000000000
Myosin head (all myosins)PF000630000000000000000000000000000000000000000

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