UHM_Akkermansia — NovInvenio reports

Lineage-specific gene analysis · one folder, three interactive reports

Reports

Each page is self-contained — open it directly, no network needed.

Novelty candidatesLineage-specific genes: present across the ingroup, absent from every outgroup proteome. Core genesNear-universally conserved genes shared by essentially every proteome, ingroup and outgroup. Candidate gene lossesGene families conserved across the outgroups but (nearly) absent from the ingroup.

Run summary

Parameters and proteomes from config.csv.

Ingroup proteomes
6
Outgroup proteomes
8
Search tool
diamond
Ingroup min fraction
0.75
Outgroup min fraction
0.75
Loss ingroup max fraction
0
Core min fraction
0.95

Ingroup (6)

Genes are called lineage-specific relative to this clade.

ShortSpeciesTaxon group
C286Candidate genus sp. EHM034720candidate_genus
C287Candidate genus sp. EHM034692candidate_genus
C288Candidate genus sp. UHM1073.23039_R.bin.125candidate_genus
C289Candidate genus sp. EHM034674candidate_genus
C294Candidate genus sp. UHM1210.23070_R.bin.101candidate_genus
C298Candidate genus sp. STP248.12601_R.bin.118candidate_genus

Outgroup (8)

Background proteomes used to exclude broadly conserved genes.

ShortSpeciesTaxon group
clade01Akkermansia sp. AKK_clade01_n39_amphibian39Akkermansia
clade02Akkermansia sp. S24M_St_8Akkermansia
clade03Akkermansia sp. RGIG6206Akkermansia
clade04Akkermansia sp. MAG30Akkermansia
clade05Akkermansia sp. AKK_clade05_n14_amphibian13-unknown1Akkermansia
clade06Akkermansia sp. AKK_clade06_n11_amphibian11Akkermansia
clade07Akkermansia sp. Lapin-004__bin59Akkermansia
clade08Akkermansia sp. S38M_St_6Akkermansia